Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-62 241.9 119 100.0
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-62 241.9 119 100.0
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.6e-45 186.0 97 94.8
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 2.2e-34 149.1 93 79.6
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 2.2e-34 149.1 93 79.6
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 4.9e-34 147.9 93 78.5
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 1.9e-33 146.0 91 79.1
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 4.2e-33 144.8 91 78.0
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 4.2e-33 144.8 91 76.9
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 5.5e-33 144.4 91 76.9
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 5.5e-33 144.4 91 76.9
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 7.1e-33 144.1 95 75.8
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 7.1e-33 144.1 95 75.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 7.1e-33 144.1 91 78.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 7.1e-33 144.1 91 76.9
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 9.3e-33 143.7 91 75.8
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.7e-32 142.1 91 74.7
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 2.7e-32 142.1 91 75.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 3.5e-32 141.7 91 74.7
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 3.5e-32 141.7 91 74.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 3.5e-32 141.7 91 74.7
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 4.6e-32 141.4 95 73.7
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 6.0e-32 141.0 91 73.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 7.9e-32 140.6 91 74.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 1.0e-31 140.2 95 73.7
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.0e-31 140.2 95 73.7
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 1.0e-31 140.2 91 74.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.0e-31 140.2 91 73.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.0e-31 140.2 95 74.7
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.3e-31 139.8 91 72.5
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.3e-31 139.8 91 73.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.3e-31 139.8 91 73.6
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.3e-31 139.8 91 74.7
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 1.3e-31 139.8 91 74.7
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.3e-31 139.8 86 79.1
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 1.8e-31 139.4 91 73.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 1.8e-31 139.4 92 75.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.3e-31 139.0 91 73.6
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 2.3e-31 139.0 91 73.6
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 3.0e-31 138.7 91 72.5
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 3.0e-31 138.7 91 72.5
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 3.9e-31 138.3 95 71.6
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 3.9e-31 138.3 91 73.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 5.1e-31 137.9 91 71.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 5.1e-31 137.9 91 71.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 5.1e-31 137.9 91 71.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 5.1e-31 137.9 91 71.4
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 5.1e-31 137.9 91 71.4
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 6.7e-31 137.5 91 71.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 6.7e-31 137.5 91 73.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 6.7e-31 137.5 95 73.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 6.7e-31 137.5 91 73.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 8.7e-31 137.1 95 72.6
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 8.7e-31 137.1 95 72.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 8.7e-31 137.1 91 72.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 8.7e-31 137.1 91 72.5
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 8.7e-31 137.1 91 72.5
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 8.7e-31 137.1 91 72.5
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 1.1e-30 136.7 91 71.4
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.5e-30 136.3 91 72.5
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 1.5e-30 136.3 91 72.5
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 1.5e-30 136.3 91 71.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 1.5e-30 136.3 91 71.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.5e-30 136.3 91 72.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.9e-30 136.0 91 72.5
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 2.5e-30 135.6 91 71.4
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 2.5e-30 135.6 88 70.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 3.3e-30 135.2 91 71.4
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 3.3e-30 135.2 88 70.5
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 3.3e-30 135.2 95 70.5
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 4.3e-30 134.8 91 70.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 5.7e-30 134.4 88 69.3
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 7.4e-30 134.0 91 69.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 7.4e-30 134.0 91 69.2
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 7.4e-30 134.0 95 71.6
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.4e-30 134.0 91 70.3
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 9.6e-30 133.7 91 71.4
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 9.6e-30 133.7 91 71.4
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 9.6e-30 133.7 91 71.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 9.6e-30 133.7 91 71.4
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 1.3e-29 133.3 92 72.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 1.3e-29 133.3 95 69.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 1.3e-29 133.3 86 76.7
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 1.6e-29 132.9 91 70.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.1e-29 132.5 86 77.9
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 2.1e-29 132.5 91 70.3
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.8e-29 132.1 93 71.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 2.8e-29 132.1 91 70.3
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 2.8e-29 132.1 91 70.3
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.8e-29 132.1 91 70.3
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 3.7e-29 131.7 96 70.8
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 6.2e-29 131.0 95 69.5
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 6.2e-29 131.0 91 71.4
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 8.2e-29 130.6 91 70.3
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 8.2e-29 130.6 91 70.3
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 8.2e-29 130.6 92 70.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 1.1e-28 130.2 91 70.3
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 2.4e-28 129.0 91 73.6
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 2.4e-28 129.0 95 69.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 3.1e-28 128.6 91 69.2
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 3.1e-28 128.6 92 70.7
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 4.1e-28 128.3 91 65.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 5.3e-28 127.9 91 69.2
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 9.0e-28 127.1 90 70.0
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 9.0e-28 127.1 90 67.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 9.0e-28 127.1 90 67.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.2e-27 126.7 91 68.1
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.2e-27 126.7 91 68.1
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 1.5e-27 126.3 87 69.0
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.5e-27 126.3 95 67.4
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 3.4e-27 125.2 95 66.3
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 3.4e-27 125.2 91 67.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 4.5e-27 124.8 87 73.6
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 4.5e-27 124.8 97 64.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 4.5e-27 124.8 92 67.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 5.8e-27 124.4 91 62.6
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 7.6e-27 124.0 91 69.2
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 1.0e-26 123.6 95 67.4
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 1.7e-26 122.9 93 68.8
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 2.2e-26 122.5 90 67.8
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 2.2e-26 122.5 93 62.4
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 6.5e-26 120.9 91 64.8
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-25 120.2 93 62.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 7.2e-25 117.5 131 51.9
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 2.1e-24 115.9 91 63.7
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.1e-24 115.9 91 65.9
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 1.0e-23 113.6 95 63.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.9e-23 111.7 91 64.8
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 6.7e-23 110.9 95 62.1
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 8.7e-23 110.5 95 65.3
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 5.7e-22 107.8 91 60.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 9.7e-22 107.1 91 59.3
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 9.7e-22 107.1 91 65.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 8.2e-21 104.0 95 57.9
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 3.1e-20 102.1 95 58.9
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.1e-14 83.6 56 69.6
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 7.4e-14 80.9 93 48.4
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.4e-12 76.6 89 42.7
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 4.1e-12 75.1 38 89.5
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.2e-11 73.6 95 49.5
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 8.5e-10 67.4 52 65.4
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.1e-09 67.0 91 40.7
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.7e-06 54.7 31 83.9


User provided reference genes

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