Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 2.6e-283 978.0 486 100.0
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 4.7e-248 860.9 485 86.6
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 3.0e-247 858.2 488 85.0
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.1e-246 856.3 490 86.5
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 9.8e-222 773.5 489 76.9
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.2e-219 766.5 423 86.5
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 2.7e-219 765.4 488 76.0
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.7e-218 762.7 487 76.2
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 9.2e-212 740.3 487 74.1
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 4.4e-206 721.5 485 72.0
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.9e-196 689.5 484 69.2
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 3.0e-194 682.2 484 68.6
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 3.4e-174 615.5 492 62.8
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 1.3e-173 613.6 492 62.0
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.2e-171 607.1 485 60.4
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 4.8e-168 595.1 476 60.9
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 6.2e-168 594.7 488 61.1
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.1e-167 592.4 489 61.6
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 6.9e-167 591.3 442 63.6
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 3.4e-166 589.0 442 63.8
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 5.8e-166 588.2 429 65.5
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.0e-165 587.4 477 61.0
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.7e-165 586.6 486 60.5
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 3.8e-165 585.5 486 61.3
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 1.4e-164 583.6 474 61.0
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 7.1e-164 581.3 465 60.2
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 1.2e-163 580.5 479 58.7
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 2.7e-163 579.3 428 64.7
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.7e-163 579.3 487 57.1
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 3.5e-163 578.9 487 59.5
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 4.6e-163 578.6 429 63.6
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.0e-162 577.4 490 58.4
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 5.1e-162 575.1 488 59.8
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 6.7e-162 574.7 487 58.7
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.9e-161 573.2 484 58.1
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 1.9e-161 573.2 484 57.9
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 4.3e-161 572.0 492 56.9
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.7e-161 571.6 487 58.9
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 5.7e-161 571.6 488 59.8
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 9.6e-161 570.9 480 57.9
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.8e-160 569.3 487 58.3
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 8.2e-160 567.8 478 58.2
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 8.2e-160 567.8 487 58.1
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.1e-159 567.4 489 58.5
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 2.4e-159 566.2 529 53.7
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 4.1e-159 565.5 443 60.0
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 4.1e-159 565.5 438 61.9
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 6.9e-159 564.7 489 57.9
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-158 563.9 487 58.5
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.5e-158 563.5 492 55.9
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 2.0e-158 563.1 490 56.7
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.3e-157 560.5 490 58.0
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 1.7e-157 560.1 491 57.8
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 1.7e-157 560.1 491 57.8
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 5.0e-157 558.5 491 57.8
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 8.5e-157 557.8 489 57.3
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 1.4e-156 557.0 491 57.8
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 1.4e-156 557.0 405 65.2
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 1.4e-156 557.0 488 57.6
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 5.5e-156 555.1 490 57.1
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 7.2e-156 554.7 489 56.6
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 9.3e-156 554.3 491 56.6
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.6e-155 553.5 491 57.2
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 6.1e-155 551.6 499 56.3
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.3e-154 550.4 484 56.2
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 2.3e-154 549.7 481 55.3
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 8.7e-154 547.7 428 61.4
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 1.5e-153 547.0 484 57.4
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 1.9e-153 546.6 495 55.8
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 2.8e-152 542.7 480 55.8
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 2.8e-152 542.7 480 55.8
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 3.7e-152 542.3 490 55.5
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.1e-151 540.8 487 55.4
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.4e-151 540.4 428 61.7
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 1.5e-150 537.0 488 55.5
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.7e-149 533.5 487 56.7
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.2e-149 533.1 477 55.8
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 5.0e-149 531.9 467 56.5
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 6.5e-149 531.6 477 55.6
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 4.2e-148 528.9 467 56.1
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 5.5e-148 528.5 492 54.7
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 3.3e-145 519.2 481 54.5
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 3.3e-145 519.2 511 52.3
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 8.2e-144 514.6 424 56.1
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 4.1e-143 512.3 493 54.6
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 4.5e-142 508.8 496 52.8
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.0e-141 507.7 499 52.1
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 3.0e-138 496.1 401 59.6
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 1.5e-137 493.8 487 50.9
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 2.6e-137 493.0 496 50.6
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.3e-136 490.7 417 57.3
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 1.7e-136 490.3 487 51.7
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 2.8e-136 489.6 400 58.5
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 4.1e-135 485.7 479 52.0
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 7.0e-135 485.0 504 50.6
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 9.1e-135 484.6 400 58.0
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.0e-133 481.1 493 50.5
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 1.3e-133 480.7 498 48.4
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 2.9e-133 479.6 447 53.9
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 8.5e-133 478.0 447 53.2
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.7e-128 463.8 374 60.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 1.0e-125 454.5 411 55.7
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 7.5e-121 438.3 351 60.7
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 2.4e-119 433.3 347 59.7
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 3.8e-117 426.0 347 57.6
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.0e-117 425.6 345 61.4
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 5.0e-117 425.6 350 59.1
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 8.6e-101 371.7 283 62.9
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 2.5e-100 370.2 422 50.2
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.2e-91 341.3 457 42.9
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 1.1e-84 318.2 423 41.6
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 2.0e-81 307.4 226 64.6
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 4.4e-81 306.2 402 42.5
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 4.3e-76 289.7 283 54.1
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 3.6e-75 286.6 183 73.8
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 5.4e-71 272.7 215 62.3
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 8.7e-69 265.4 203 62.1
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 9.0e-66 255.4 479 34.7
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 7.6e-65 252.3 233 54.9
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 2.0e-57 227.6 169 69.2
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.1e-50 203.8 480 30.8
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 4.5e-49 199.9 335 36.7
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.7e-46 190.7 168 56.0
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.2e-39 167.2 195 46.7
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 5.9e-33 146.4 234 36.8
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.7e-32 144.8 273 36.3
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 4.2e-31 140.2 334 30.2
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.3e-26 123.2 110 54.5
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.0e-25 121.3 113 52.2
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.0e-24 119.0 113 51.3
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 8.8e-21 105.9 76 63.2
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 2.6e-20 104.4 76 61.8
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.8e-19 100.9 110 44.5
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 6.3e-11 73.2 79 44.3
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.1e-10 72.4 59 57.6


User provided reference genes

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