Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 1.6e-42 175.6 88 100.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 2.0e-40 168.7 86 94.2
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 2.9e-39 164.9 86 89.5
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 3.8e-39 164.5 86 88.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 3.2e-38 161.4 86 89.5
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 2.1e-37 158.7 86 86.0
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 2.1e-37 158.7 86 86.0
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 2.7e-37 158.3 86 87.2
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.1e-36 154.1 86 82.6
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.1e-36 154.1 86 82.6
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 8.7e-36 153.3 86 82.6
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.5e-35 152.5 86 81.4
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 1.9e-35 152.1 86 82.6
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 1.9e-35 152.1 86 82.6
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 5.6e-35 150.6 86 81.4
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 2.8e-34 148.3 86 80.2
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 2.8e-34 148.3 86 79.1
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 8.1e-34 146.7 86 79.1
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.1e-34 146.7 86 79.1
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.1e-34 146.7 86 79.1
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.1e-34 146.7 86 79.1
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 8.1e-34 146.7 86 76.7
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.1e-33 146.4 86 79.1
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 1.1e-33 146.4 86 80.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.4e-33 146.0 86 77.9
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 1.8e-33 145.6 86 77.9
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 1.8e-33 145.6 86 76.7
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 1.8e-33 145.6 86 76.7
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 1.8e-33 145.6 86 79.1
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.4e-33 145.2 86 77.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 3.1e-33 144.8 86 79.1
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 4.0e-33 144.4 86 77.9
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 5.3e-33 144.1 86 79.1
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 5.3e-33 144.1 86 74.4
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 6.9e-33 143.7 86 76.7
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 9.0e-33 143.3 86 75.6
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 9.0e-33 143.3 86 77.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.5e-32 142.5 85 76.5
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 2.0e-32 142.1 86 77.9
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 2.6e-32 141.7 86 75.6
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 2.6e-32 141.7 86 74.4
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 3.4e-32 141.4 86 73.3
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 3.4e-32 141.4 86 72.1
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 3.4e-32 141.4 86 73.3
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.5e-32 141.0 86 75.6
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 4.5e-32 141.0 86 75.6
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 4.5e-32 141.0 86 75.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 4.5e-32 141.0 86 76.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 4.5e-32 141.0 86 76.7
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 7.6e-32 140.2 86 74.4
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 7.6e-32 140.2 86 74.4
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 7.6e-32 140.2 86 72.1
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 7.6e-32 140.2 86 73.3
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 7.6e-32 140.2 86 74.4
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 9.9e-32 139.8 85 76.5
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 9.9e-32 139.8 86 72.1
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 9.9e-32 139.8 86 73.3
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.3e-31 139.4 86 72.1
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 1.3e-31 139.4 113 62.8
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 1.7e-31 139.0 86 72.1
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 1.7e-31 139.0 86 72.1
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 1.7e-31 139.0 86 73.3
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 1.7e-31 139.0 86 73.3
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 1.7e-31 139.0 86 75.6
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 2.2e-31 138.7 86 73.3
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 2.2e-31 138.7 86 72.1
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 2.2e-31 138.7 86 72.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 2.2e-31 138.7 86 74.4
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 2.2e-31 138.7 85 72.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.9e-31 138.3 85 74.1
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 2.9e-31 138.3 86 72.1
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.9e-31 138.3 86 70.9
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 4.9e-31 137.5 86 69.8
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 4.9e-31 137.5 86 72.1
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 4.9e-31 137.5 86 72.1
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.9e-31 137.5 86 72.1
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 4.9e-31 137.5 86 72.1
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 6.4e-31 137.1 86 73.3
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 6.4e-31 137.1 86 73.3
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 6.4e-31 137.1 86 73.3
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 6.4e-31 137.1 86 73.3
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 6.4e-31 137.1 86 72.1
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 8.4e-31 136.7 86 69.8
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 8.4e-31 136.7 86 69.8
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 8.4e-31 136.7 85 71.8
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 8.4e-31 136.7 85 71.8
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 1.1e-30 136.3 86 69.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.4e-30 136.0 86 73.3
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.9e-30 135.6 86 72.1
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.9e-30 135.6 86 69.8
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 2.5e-30 135.2 86 70.9
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 4.2e-30 134.4 86 69.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.2e-30 134.4 86 69.8
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 4.2e-30 134.4 86 69.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 4.2e-30 134.4 84 72.6
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 4.2e-30 134.4 86 70.9
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 4.2e-30 134.4 86 70.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 5.5e-30 134.0 107 62.6
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 1.6e-29 132.5 86 74.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.1e-29 132.1 86 69.8
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.7e-29 131.7 82 76.8
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 7.9e-29 130.2 72 83.3
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 7.9e-29 130.2 86 68.6
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.3e-28 128.6 72 83.3
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.0e-28 128.3 74 81.1
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 6.7e-28 127.1 75 80.0
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.7e-28 127.1 72 83.3
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.5e-27 125.9 86 66.3
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.5e-27 125.9 72 77.8
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.9e-27 125.6 86 69.8
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 2.5e-27 125.2 87 69.0
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 4.3e-27 124.4 85 70.6
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 7.4e-27 123.6 79 73.4
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 7.4e-27 123.6 81 74.1
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 9.6e-27 123.2 72 77.8
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 1.3e-26 122.9 72 79.2
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 1.8e-25 119.0 71 77.5
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 6.9e-25 117.1 72 73.6
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 6.9e-25 117.1 72 73.6
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-24 115.2 71 69.0
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 2.2e-23 112.1 69 73.9
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.6e-21 104.4 72 65.3
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.6e-21 104.4 72 65.3
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.8e-17 92.4 71 59.2
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.8e-17 92.4 71 57.7
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 5.9e-16 87.4 71 54.9
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 5.0e-15 84.3 71 52.1
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 8.5e-15 83.6 71 53.5
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.1e-14 83.2 71 52.1
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.9e-07 58.5 69 39.1


User provided reference genes

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