Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 0.0e+00 1165.2 622 100.0
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 2.7e-248 862.1 638 76.8
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 2.9e-234 815.5 638 72.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.4e-182 642.1 596 69.5
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 2.1e-96 357.5 765 43.0
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 2.1e-96 357.5 797 42.2
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 6.9e-87 325.9 643 44.0
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 9.4e-84 315.5 730 41.6
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 4.1e-79 300.1 580 42.6
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.0e-78 297.7 676 39.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-68 265.4 648 36.9
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 4.2e-68 263.5 633 37.4
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 6.5e-53 213.0 681 32.7
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.9e-52 211.5 385 42.9
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.1e-51 208.0 524 36.3
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.8e-50 203.0 524 36.1
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 8.8e-50 202.6 577 34.3
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.2e-49 202.2 712 30.6
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.6e-49 201.1 649 31.0
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.4e-49 200.7 688 31.8
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 4.4e-49 200.3 412 37.9
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 7.5e-49 199.5 515 34.6
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 7.5e-49 199.5 686 33.7
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 9.8e-49 199.1 632 31.8
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.3e-48 196.4 437 38.9
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.8e-47 194.9 437 38.7
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.8e-47 194.9 437 38.7
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 2.4e-47 194.5 648 32.6
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 7.0e-47 193.0 404 39.6
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 7.0e-47 193.0 689 31.5
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.2e-46 192.2 703 32.7
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.2e-46 192.2 704 30.3
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 4.5e-46 190.3 704 28.8
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 8.6e-45 186.0 660 30.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 5.5e-44 183.3 635 31.8
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 5.5e-44 183.3 568 32.2
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.8e-43 181.0 655 31.1
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 6.1e-43 179.9 587 34.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 2.3e-42 177.9 710 30.6
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 2.3e-42 177.9 727 30.5
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.4e-41 174.1 395 38.0
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 4.4e-41 173.7 688 31.8
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 7.5e-41 172.9 383 38.4
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.3e-40 172.2 736 30.6
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.8e-40 171.0 641 31.4
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 6.3e-40 169.9 385 37.9
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.1e-39 169.1 628 29.9
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.4e-39 168.7 643 31.9
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 4.1e-39 167.2 663 28.1
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 5.4e-39 166.8 620 30.2
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 7.0e-39 166.4 558 30.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 9.2e-39 166.0 662 31.6
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 2.0e-38 164.9 632 31.2
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.0e-37 162.5 667 29.4
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.0e-37 162.5 638 30.7
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.0e-37 162.5 674 30.6
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.7e-37 161.8 703 30.3
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.3e-37 161.4 667 29.4
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 6.6e-37 159.8 662 31.4
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 8.6e-37 159.5 349 39.0
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.5e-36 158.7 614 30.9
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.5e-36 156.0 509 32.6
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.6e-35 155.2 340 38.5
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.6e-35 155.2 628 30.9
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.6e-35 154.1 410 33.4
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.1e-34 151.0 554 31.0
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 3.1e-34 151.0 347 37.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 4.0e-34 150.6 643 30.5
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 4.0e-34 150.6 356 37.6
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 6.8e-34 149.8 399 32.6
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 3.4e-33 147.5 470 30.2
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.8e-33 146.7 660 29.1
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 7.5e-33 146.4 653 30.0
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 9.8e-33 146.0 367 35.7
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.3e-32 145.6 366 35.2
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.2e-32 144.8 578 32.0
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 2.2e-32 144.8 637 29.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.9e-32 144.4 362 35.1
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.9e-32 144.4 362 35.1
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 4.9e-32 143.7 370 35.1
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 6.4e-32 143.3 423 33.8
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 1.6e-30 138.7 620 29.8
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.0e-30 138.3 618 28.6
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.7e-30 137.9 523 30.0
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 7.8e-30 136.3 375 34.4
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 3.9e-29 134.0 661 25.9
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 5.0e-29 133.7 355 33.8
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.1e-28 132.5 677 28.8
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.6e-28 130.2 661 26.2
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 3.6e-27 127.5 386 31.9
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.8e-26 125.2 635 26.9
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 9.8e-25 119.4 367 31.1
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.3e-24 119.0 590 29.2
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.9e-23 115.2 660 26.5
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.1e-20 105.9 573 29.0
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 7.3e-20 103.2 592 25.7
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 8.1e-19 99.8 346 30.9
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 2.3e-18 98.2 536 25.0
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 3.1e-18 97.8 416 30.5
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.8e-18 96.7 582 27.5
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 1.4e-15 89.0 393 27.7
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.5e-14 84.3 356 28.7
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 6.0e-14 83.6 678 24.3
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.3e-13 81.6 582 25.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 8.6e-13 79.7 344 29.1
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 8.9e-10 69.7 213 31.0
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 5.8e-09 67.0 213 30.0
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.7e-08 65.5 225 25.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 1.7e-08 65.5 173 29.5
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 2.9e-08 64.7 207 30.0
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.9e-08 63.9 220 26.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.9e-08 63.9 74 48.6
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 6.4e-08 63.5 214 27.6
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 8.4e-08 63.2 233 27.9
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.4e-07 61.6 526 25.5
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 3.2e-07 61.2 209 27.3
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 4.2e-07 60.8 72 45.8
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.2e-07 60.8 211 30.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 4.2e-07 60.8 74 45.9
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 9.2e-07 59.7 225 27.6
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 9.2e-07 59.7 249 26.1
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.2e-06 59.3 220 26.4
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 1.2e-06 59.3 111 35.1
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.6e-06 58.9 63 50.8
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.1e-06 58.5 207 30.9
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.1e-06 58.5 153 28.8
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.7e-06 58.2 61 52.5
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.7e-06 58.2 77 40.3
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 6.0e-06 57.0 105 35.2
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 6.0e-06 57.0 94 36.2
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 7.8e-06 56.6 215 28.4


User provided reference genes

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