Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 2500.7 1275 100.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2162.1 1277 86.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 2069.7 1277 82.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 2066.2 1331 80.2
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2046.2 1264 82.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2012.7 1275 80.1
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2009.6 1269 79.7
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2002.3 1273 79.6
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1999.9 1265 79.9
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1975.7 1275 78.7
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1968.0 1275 77.8
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1953.7 1273 77.1
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1942.2 1344 74.3
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1923.3 1273 76.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1754.6 1261 71.0
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1732.2 1261 70.7
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1729.9 1274 69.9
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1724.1 1271 69.6
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1721.1 1262 70.4
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1721.1 1275 70.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1720.3 1261 70.1
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1719.1 1273 69.8
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1261 69.7
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1714.1 1260 70.5
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1709.5 1302 68.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1699.5 1280 68.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1699.1 1280 68.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1697.6 1260 69.7
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1695.6 1276 68.3
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1694.5 1280 68.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1689.5 1260 69.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1676.0 1261 69.2
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1661.7 1281 67.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1659.4 1263 67.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1268 67.4
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1638.6 1264 66.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1636.3 1327 65.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1628.6 1282 65.8
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1625.1 1271 64.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1624.0 1268 66.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1622.1 1278 65.1
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1620.5 1262 65.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1611.7 1264 66.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1267 65.3
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1300 64.3
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1610.5 1272 66.3
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1258 64.9
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1602.4 1281 64.9
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1281 63.9
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1599.7 1287 66.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1260 64.5
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1281 63.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1260 64.6
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1587.0 1259 64.4
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1262 63.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1580.1 1277 63.7
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1578.1 1190 68.7
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1272 63.4
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1279 62.5
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1274 62.7
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1270 64.7
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1265 63.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1566.2 1325 62.2
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1272 64.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1563.9 1264 63.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1560.4 1273 63.6
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1558.1 1285 63.7
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1557.7 1278 62.4
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1557.3 1266 63.7
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1546.9 1260 63.8
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1235 65.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1540.8 1266 63.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1540.0 1271 63.6
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1529.2 1329 60.3
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1526.9 1191 66.0
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1521.5 1279 62.9
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1520.4 1256 63.5
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1256 63.6
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1279 62.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1510.4 1262 62.6
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1485.3 1279 62.0
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1479.9 1195 63.9
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1479.5 1275 61.2
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1461.0 1263 61.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1459.9 1192 64.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1454.5 1313 59.2
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1440.2 1218 62.5
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1411.7 1028 70.3
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1397.1 1179 62.3
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1393.3 1014 70.4
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1389.4 1278 57.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1380.5 1273 57.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1347.4 1264 56.2
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1342.0 1295 55.5
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1319.7 1262 55.5
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1218.4 1046 61.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1144.4 893 66.1
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1114.8 1275 48.2
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1100.5 1275 50.0
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1082.0 1262 46.4
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.7e-311 1073.2 895 62.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 6.8e-307 1057.7 982 56.7
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 8.9e-299 1030.8 956 58.5
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 6.9e-291 1004.6 799 64.7
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.8e-281 972.2 661 74.1
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.6e-279 966.8 822 61.4
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.6e-276 956.8 1195 45.1
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.0e-250 870.2 1233 41.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.4e-203 713.8 556 66.9
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 2.4e-203 713.8 1293 35.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 4.6e-178 629.8 628 55.3
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 4.0e-174 616.7 1419 33.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 3.0e-169 600.5 611 52.7
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 9.0e-166 589.0 467 64.0
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 6.4e-164 582.8 1280 32.4
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 5.3e-158 563.1 493 60.2
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 9.3e-147 525.8 664 47.1
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.6e-122 444.1 325 68.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 8.5e-116 422.9 1166 29.7
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.6e-114 418.7 711 40.5
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.7e-114 417.9 275 74.9
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.8e-90 338.2 246 69.9
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.3e-87 329.3 346 51.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.8e-81 308.9 230 67.8
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 5.4e-78 297.4 273 56.4
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 5.4e-78 297.4 273 56.4
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.1e-73 281.6 200 68.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.2e-71 275.4 252 55.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 6.9e-57 227.3 179 66.5
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 5.6e-51 207.6 179 64.8
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.8e-50 205.3 161 66.5
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.3e-42 179.9 161 57.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.3e-41 174.5 104 77.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 3.9e-36 158.3 1210 23.0
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 7.6e-32 144.1 111 73.0
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.5e-30 137.9 129 55.0
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.3e-28 132.5 96 66.7
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 2.5e-27 129.0 226 41.2
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.7e-26 125.2 121 59.5
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.1e-19 103.6 114 47.4
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.4e-19 100.9 114 45.6
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.3e-18 100.1 162 41.4
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.8e-18 99.0 62 80.6
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 6.3e-18 97.8 92 55.4
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-16 93.2 135 37.0
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.0e-15 90.5 101 47.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.4e-12 80.1 125 38.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.6e-11 75.9 126 36.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 7.4e-11 74.3 145 39.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 1.1e-09 70.5 235 25.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.2e-08 67.0 66 48.5
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.6e-08 65.9 61 52.5
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.1e-06 60.5 39 69.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-06 60.1 88 43.2


User provided reference genes

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