Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 0.0e+00 2874.7 1530 100.0
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 0.0e+00 1806.2 1647 64.3
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 0.0e+00 1669.4 1639 61.9
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 0.0e+00 1464.9 1466 59.6
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 0.0e+00 1212.6 1685 48.0
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1206.8 1714 47.7
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 0.0e+00 1200.7 1742 47.1
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.1e-306 1055.8 1738 44.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 4.0e-285 985.7 1752 42.8
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 4.7e-278 962.2 1699 43.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.4e-269 934.1 1756 41.0
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.3e-267 927.5 1753 40.7
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 6.0e-257 892.1 1672 41.8
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.6e-256 888.6 1812 39.1
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 9.1e-181 639.0 359 91.9
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 2.2e-142 511.5 462 63.6
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 3.9e-131 474.2 1895 30.1
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 9.6e-122 443.0 1918 28.8
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.0e-107 396.4 1878 28.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 6.2e-97 360.5 1948 27.8
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-91 342.8 1916 27.5
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.6e-84 319.3 279 64.5
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.7e-83 313.5 1684 27.1
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 4.1e-80 304.7 1662 27.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 7.7e-79 300.4 1702 28.2
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 3.3e-74 285.0 1813 26.3
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.7e-73 282.7 1858 26.4
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 2.4e-72 278.9 1806 26.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-70 273.1 1736 27.3
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 6.5e-70 270.8 1870 26.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 8.5e-70 270.4 1608 27.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.1e-69 270.0 1882 27.5
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.1e-64 251.9 336 46.1
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.1e-64 251.5 1646 28.3
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 9.1e-64 250.4 1911 26.2
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 7.7e-63 247.3 1690 27.0
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 6.7e-59 234.2 1675 27.0
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.3e-58 231.9 1661 26.9
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.8e-57 228.8 1655 27.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.1e-56 225.3 1783 26.2
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.3e-56 224.6 1654 26.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.9e-53 216.1 1971 24.6
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.5e-53 214.5 1763 24.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 6.8e-51 207.6 1911 25.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.5e-50 206.5 1701 25.8
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 4.4e-50 204.9 1662 25.6
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.7e-49 203.0 1883 25.9
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.2e-49 202.6 1942 25.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 6.3e-49 201.1 1768 25.6
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.3e-49 200.7 1837 25.2
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.2e-47 196.8 1818 25.6
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-47 196.4 1685 26.2
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 7.7e-47 194.1 1708 25.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.3e-46 193.4 1703 24.7
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 6.5e-46 191.0 852 29.7
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.0e-44 184.1 880 30.3
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.4e-42 178.7 1825 25.3
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 3.4e-42 178.7 1850 25.4
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.2e-41 176.0 1634 23.7
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.4e-40 173.3 1639 24.8
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-39 169.9 1718 25.7
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.7e-39 169.1 1834 23.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 4.5e-39 168.3 1397 26.3
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.3e-38 166.0 179 58.1
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.8e-38 165.2 1591 25.7
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 6.6e-38 164.5 608 28.9
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 7.3e-37 161.0 1632 25.6
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.2e-33 149.4 720 29.3
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 6.4e-33 147.9 1702 24.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.0e-30 140.6 716 29.5
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.7e-30 139.8 1747 22.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.6e-28 133.3 506 34.6
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.7e-28 131.7 713 28.6
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 3.1e-27 129.0 1722 24.1
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 3.1e-27 129.0 1779 24.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 4.0e-27 128.6 890 28.9
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 9.8e-26 124.0 666 29.7
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.2e-25 122.9 1756 23.7
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.7e-25 122.1 397 32.0
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.1e-24 120.6 1793 23.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.9e-24 119.8 708 27.7
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 7.0e-24 117.9 1627 22.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.6e-23 116.7 1806 22.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 2.0e-23 116.3 728 29.7
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.5e-23 115.5 710 26.8
Medtr8g465700 Medicago truncatula HOM05D000451 ORTHO05D000351 6.0e-23 114.8 112 57.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.0e-23 114.8 682 30.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.0e-22 114.0 705 27.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-21 110.2 541 33.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 3.6e-20 105.5 1900 22.5
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 8.1e-20 104.4 1626 21.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.3e-19 102.8 1941 22.3
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.4e-18 98.6 671 26.8
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.4e-18 98.6 1737 23.6
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.5e-18 97.8 196 32.7
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.2e-17 96.3 451 27.5
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 4.9e-17 95.1 1417 21.7
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 6.4e-17 94.7 668 28.4
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 4.1e-16 92.0 655 29.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 4.6e-15 88.6 1619 23.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.9e-13 83.2 654 29.4
Psat7g120880 Pisum sativum HOM05D000120 ORTHO05D030268 1.9e-13 83.2 48 85.4
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 4.3e-13 82.0 421 27.8
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 4.3e-13 82.0 487 34.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-12 80.1 327 30.6
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 2.8e-12 79.3 657 29.2
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.6e-12 79.0 867 24.8
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.8e-11 76.6 498 28.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.3e-11 76.3 1856 22.3
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 2.3e-11 76.3 231 32.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 3.1e-11 75.9 687 25.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 6.8e-11 74.7 1736 22.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.8e-11 74.7 867 24.6
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.2e-10 73.9 85 50.6
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 2.0e-10 73.2 654 28.9
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.6e-10 72.8 1669 24.2
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 9.9e-10 70.9 290 26.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.2e-09 69.7 656 27.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 3.8e-09 68.9 1728 23.1
Medtr8g465710 Medicago truncatula HOM05D006281 ORTHO05D005150 1.1e-08 67.4 67 58.2
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 5.4e-08 65.1 452 24.3
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 5.4e-08 65.1 255 38.0
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 7.1e-08 64.7 69 49.3
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.6e-07 63.5 611 23.6
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 7.8e-07 61.2 449 24.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.3e-06 60.5 1813 23.0
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.7e-06 60.1 308 26.3


User provided reference genes

Program Settings