Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 3.9e-54 214.5 107 100.0
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 1.5e-45 186.0 114 84.2
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 4.9e-41 171.0 110 80.0
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 1.9e-40 169.1 114 80.7
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.9e-32 142.5 115 72.2
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 7.1e-32 140.6 110 69.1
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 6.0e-31 137.5 110 68.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 6.2e-28 127.5 107 67.3
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 1.1e-24 116.7 108 58.3
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.5e-18 96.3 101 56.4
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.1e-16 90.1 107 53.3
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 7.1e-16 87.4 107 50.5
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 4.6e-15 84.7 72 62.5
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 1.3e-14 83.2 108 50.9
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.3e-14 83.2 68 63.2
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.3e-14 83.2 68 63.2
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.8e-14 82.8 114 50.0
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.3e-14 82.4 112 46.4
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.3e-14 82.4 67 62.7
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 3.9e-14 81.6 67 62.7
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 3.9e-14 81.6 75 58.7
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 5.1e-14 81.3 109 50.5
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 8.7e-14 80.5 114 49.1
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 5.6e-13 77.8 93 51.6
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 5.6e-13 77.8 79 54.4
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 5.6e-13 77.8 71 62.0
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.4e-13 77.4 75 61.3
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 7.4e-13 77.4 62 69.4
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 9.6e-13 77.0 72 59.7
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 1.3e-12 76.6 81 54.3
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.3e-12 76.6 74 62.2
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 1.3e-12 76.6 73 57.5
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 1.3e-12 76.6 103 48.5
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 1.6e-12 76.3 76 57.9
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.6e-12 76.3 111 48.6
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 1.6e-12 76.3 68 58.8
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 2.1e-12 75.9 71 56.3
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 2.1e-12 75.9 68 58.8
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 2.8e-12 75.5 63 63.5
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 2.8e-12 75.5 110 47.3
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 4.8e-12 74.7 60 68.3
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 6.2e-12 74.3 75 60.0
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 6.2e-12 74.3 75 60.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 6.2e-12 74.3 68 55.9
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.1e-11 73.6 68 60.3
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 1.4e-11 73.2 73 54.8
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.8e-11 72.8 63 61.9
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 3.1e-11 72.0 68 58.8
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 4.0e-11 71.6 71 62.0
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 9.0e-11 70.5 66 59.1
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 9.0e-11 70.5 97 52.6
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 1.2e-10 70.1 69 59.4
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.5e-10 69.7 72 61.1
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 2.0e-10 69.3 110 41.8
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.0e-10 69.3 72 59.7
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 4.5e-10 68.2 106 45.3
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 5.8e-10 67.8 67 55.2
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 7.6e-10 67.4 68 57.4
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.0e-09 67.0 70 51.4
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.0e-09 67.0 63 57.1
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.0e-09 67.0 63 57.1
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.0e-09 67.0 72 58.3
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.0e-09 67.0 68 57.4
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 6.5e-09 64.3 62 61.3
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 8.4e-09 63.9 68 55.9
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 8.4e-09 63.9 68 52.9
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 1.1e-08 63.5 56 60.7
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 1.9e-08 62.8 73 57.5
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.5e-08 62.4 96 44.8
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 5.5e-08 61.2 57 59.6
Lalb_Chr02g0144981 Lupinus albus HOM05D007107 ORTHO05D009198 9.3e-08 60.5 88 46.6
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 9.3e-08 60.5 83 50.6
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 1.2e-07 60.1 66 54.5
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.6e-07 59.7 76 50.0
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 2.1e-07 59.3 110 40.0
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.1e-07 59.3 65 58.5
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 4.6e-07 58.2 63 57.1
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 6.0e-07 57.8 79 48.1
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 6.0e-07 57.8 67 53.7
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 1.0e-06 57.0 64 54.7
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 1.8e-06 56.2 64 56.2
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.8e-06 56.2 64 54.7
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.8e-06 56.2 57 54.4
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 3.0e-06 55.5 92 42.4
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 3.0e-06 55.5 92 42.4
Lalb_Chr25g0278741 Lupinus albus HOM05D007107 ORTHO05D009198 3.0e-06 55.5 54 61.1
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 3.9e-06 55.1 61 57.4
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 6.7e-06 54.3 66 53.0


User provided reference genes

Program Settings