Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 7.3e-172 607.1 292 100.0
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 1.7e-152 542.7 290 88.6
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.4e-151 538.9 289 88.6
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 4.5e-145 518.1 290 83.4
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 3.4e-137 491.9 296 80.1
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.8e-133 479.6 293 77.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 6.5e-128 461.1 255 83.5
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.5e-127 459.1 284 76.4
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 1.6e-126 456.4 288 74.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 6.1e-126 454.5 292 72.9
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.4e-119 433.3 314 67.2
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 9.7e-116 420.6 286 70.3
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 6.3e-115 417.9 283 70.7
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.8e-114 416.4 285 70.2
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.5e-113 413.3 285 68.8
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 4.5e-113 411.8 273 70.3
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.8e-112 408.7 291 68.0
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 8.5e-112 407.5 291 68.0
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.4e-111 406.8 291 67.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.2e-111 405.6 288 66.3
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 3.0e-109 399.1 280 66.1
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 5.2e-109 398.3 280 65.7
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.5e-108 396.7 284 64.4
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.0e-108 396.4 288 65.6
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.0e-108 396.4 283 63.6
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.0e-106 387.9 289 63.7
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.6e-105 386.0 254 70.5
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 3.5e-105 385.6 280 66.1
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.0e-104 384.0 280 66.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.3e-104 383.6 282 65.2
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 2.2e-104 382.9 291 61.2
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 2.2e-104 382.9 285 64.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 2.9e-104 382.5 283 63.6
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 8.5e-104 380.9 282 64.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.5e-103 380.2 288 62.2
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.2e-103 378.6 284 63.4
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-102 377.1 287 62.4
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.6e-102 375.6 280 61.8
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 6.1e-102 374.8 271 66.8
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 8.0e-102 374.4 282 62.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.4e-101 373.6 277 62.8
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.8e-101 373.2 277 65.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.3e-101 372.9 246 69.1
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 3.0e-101 372.5 287 60.6
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.0e-101 372.5 273 63.4
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 4.0e-101 372.1 291 61.2
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 5.2e-101 371.7 284 64.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.1e-100 370.5 267 64.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.0e-100 369.8 272 62.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 5.7e-100 368.2 282 61.7
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 7.5e-100 367.9 292 58.9
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.3e-99 367.1 274 64.6
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.3e-99 367.1 266 62.4
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.3e-99 367.1 292 58.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.7e-99 366.7 284 59.9
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.8e-99 365.9 282 61.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.7e-99 365.5 273 62.3
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 4.8e-99 365.2 287 62.4
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 6.3e-99 364.8 273 61.9
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 6.3e-99 364.8 287 60.6
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 4.1e-98 362.1 266 65.0
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 4.1e-98 362.1 251 65.3
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 4.1e-98 362.1 281 60.5
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.3e-98 361.7 286 59.8
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 3.5e-97 359.0 271 61.3
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.5e-96 354.4 294 57.5
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.1e-95 354.0 288 59.0
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.9e-95 353.2 274 62.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 4.2e-95 352.1 274 61.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 9.4e-95 350.9 283 56.9
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.6e-94 350.1 291 62.9
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.6e-94 350.1 273 61.5
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.7e-94 349.4 233 67.8
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.7e-94 348.6 257 62.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 6.1e-94 348.2 272 62.9
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 8.0e-94 347.8 274 61.3
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 4.0e-93 345.5 290 58.3
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 4.0e-93 345.5 280 59.6
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.5e-92 343.6 257 62.3
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.5e-92 343.6 278 60.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.4e-92 342.4 251 65.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 8.3e-91 337.8 269 59.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 7.0e-90 334.7 284 54.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 3.5e-89 332.4 273 60.4
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.0e-88 330.9 256 60.2
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.8e-88 328.9 264 59.8
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 5.0e-88 328.6 276 58.3
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.5e-87 327.0 265 58.9
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.8e-85 320.1 275 56.0
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 5.2e-85 318.5 281 54.4
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.5e-81 305.8 237 59.9
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 1.5e-79 300.4 250 54.0
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.0e-77 292.4 237 57.4
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.7e-75 285.8 273 56.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 5.4e-74 282.0 283 46.6
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-72 277.7 272 52.2
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.1e-70 270.0 271 52.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 3.6e-70 269.2 272 50.7
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.3e-69 266.5 275 52.4
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 6.8e-69 265.0 272 51.1
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 8.9e-69 264.6 273 49.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-68 263.8 272 50.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-68 263.8 272 50.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-68 261.9 290 49.0
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-68 261.9 275 50.2
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 5.8e-68 261.9 290 49.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 9.8e-68 261.2 288 47.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.7e-67 260.4 254 49.2
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.9e-67 259.6 280 49.3
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.7e-67 259.2 277 48.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.7e-67 259.2 279 49.1
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-65 253.8 273 47.6
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.0e-64 251.1 253 49.8
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.9e-64 249.2 277 47.3
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 1.1e-58 231.1 230 47.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.0e-49 198.7 240 43.8
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.3e-48 197.6 303 37.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.1e-46 188.3 234 39.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.2e-44 184.5 269 38.3
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.0e-44 183.7 199 47.2
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 9.6e-39 164.9 224 39.7
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-38 163.7 277 37.2
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.0e-36 157.1 193 42.0
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-35 154.5 193 42.0
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.9e-35 153.3 193 40.9
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 4.9e-35 152.5 243 37.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-34 150.2 209 44.0
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.4e-34 149.1 276 35.9
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 2.1e-33 147.1 199 41.7
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 7.9e-33 145.2 242 36.4
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-32 144.4 181 43.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-32 144.4 184 41.8
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-31 141.4 199 41.7
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.4e-29 133.7 147 44.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.0e-28 130.6 200 38.0
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.5e-28 129.4 88 69.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 7.6e-28 128.6 147 44.9
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.7e-25 120.2 147 44.9
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 4.3e-23 112.8 177 34.5
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-20 103.2 199 35.7
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.4e-20 103.2 199 35.7
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 4.2e-18 96.3 144 41.0
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 4.6e-17 92.8 73 57.5
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 2.5e-15 87.0 95 45.3
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-13 81.6 62 59.7
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-13 81.6 62 59.7
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.5e-12 77.8 91 44.0


User provided reference genes

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