Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g143640 Pisum sativum HOM05D003473 ORTHO05D003872 3.1e-256 887.9 428 100.0
TPR.G22327 Trifolium pratense HOM05D003473 ORTHO05D003872 2.0e-210 735.7 424 83.7
Medtr1g080320 Medicago truncatula HOM05D003473 ORTHO05D003872 1.9e-208 729.2 420 84.3
Glyma.20G223600 Glycine max HOM05D003473 ORTHO05D003872 7.6e-186 654.1 426 76.1
Glyma.10G165600 Glycine max HOM05D003473 ORTHO05D003872 6.5e-185 651.0 427 75.6
Lj5g0017612 Lotus japonicus HOM05D003473 ORTHO05D003872 1.4e-184 649.8 429 74.8
Phvul.L001660 Phaseolus vulgaris HOM05D003473 ORTHO05D003872 1.8e-179 632.9 426 72.5
VMungo0720G0613 Vigna mungo HOM05D003473 ORTHO05D003872 2.4e-179 632.5 420 73.6
Lalb_Chr06g0168251 Lupinus albus HOM05D003473 ORTHO05D003872 2.6e-178 629.0 423 73.0
Lalb_Chr02g0149051 Lupinus albus HOM05D003473 ORTHO05D003872 1.7e-177 626.3 427 72.8
Ca_10021_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 4.1e-171 605.1 349 83.7
Ca_29585_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 4.1e-171 605.1 349 83.7
arahy.Tifrunner.gnm1.ann1.K8P0T6 Arachis hypogaea HOM05D003473 ORTHO05D003872 5.9e-170 601.3 432 69.0
arahy.Tifrunner.gnm1.ann1.T51LW4 Arachis hypogaea HOM05D003473 ORTHO05D003872 2.4e-163 579.3 427 67.4
TPR.G6958 Trifolium pratense HOM05D003473 ORTHO05D003872 5.9e-162 574.7 425 66.8
Atru.chr2.998 Acer truncatum HOM05D003473 ORTHO05D003872 1.7e-161 573.2 423 66.9
arahy.Tifrunner.gnm1.ann1.F06EBP Arachis hypogaea HOM05D003473 ORTHO05D003872 1.7e-161 573.2 423 67.1
CiPaw.07G073400 Carya illinoinensis HOM05D003473 ORTHO05D003872 1.7e-161 573.2 421 66.3
Glyma.03G250300 Glycine max HOM05D003473 ORTHO05D003872 5.5e-160 568.2 420 68.6
QL03p029857 Quercus lobata HOM05D003473 ORTHO05D003872 1.8e-158 563.1 426 65.7
Nitab4.5_0001913g0170 Nicotiana tabacum HOM05D003473 ORTHO05D003872 1.5e-157 560.1 421 66.0
MD04G1231000 Malus domestica HOM05D003473 ORTHO05D003872 1.7e-156 556.6 429 65.0
Potri.013G047600 Populus trichocarpa HOM05D003473 ORTHO05D003872 6.3e-156 554.7 428 64.7
Thecc.05G270100 Theobroma cacao HOM05D003473 ORTHO05D003872 3.1e-155 552.4 427 64.6
MD12G1249300 Malus domestica HOM05D003473 ORTHO05D003872 5.3e-155 551.6 430 64.2
Manes.08G140000 Manihot esculenta HOM05D003473 ORTHO05D003872 7.7e-154 547.7 428 63.8
Ciclev10019419m.g Citrus clementina HOM05D003473 ORTHO05D003872 1.3e-153 547.0 431 65.2
Nitab4.5_0011129g0030 Nicotiana tabacum HOM05D003473 ORTHO05D003872 1.3e-153 547.0 421 65.1
Dinv25278 Davidia involucrata HOM05D003473 ORTHO05D003872 8.5e-153 544.3 427 63.9
Medtr7g115570 Medicago truncatula HOM05D003473 ORTHO05D003872 1.9e-152 543.1 425 64.2
CAN.G24.3 Capsicum annuum HOM05D003473 ORTHO05D003872 2.5e-152 542.7 421 63.9
Dinv15516 Davidia involucrata HOM05D003473 ORTHO05D003872 2.5e-152 542.7 426 63.6
Potri.019G019800 Populus trichocarpa HOM05D003473 ORTHO05D003872 6.1e-151 538.1 428 62.9
Cfa006361 Carpinus fangiana HOM05D003473 ORTHO05D003872 2.3e-150 536.2 418 63.9
Haze_04416 Corylus avellana HOM05D003473 ORTHO05D003872 6.7e-150 534.6 421 63.7
Hma1.2p1_1007F.1_g247110 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 6.7e-150 534.6 431 61.3
CANSAT54G3011 Cannabis sativa HOM05D003473 ORTHO05D003872 2.0e-149 533.1 427 62.8
Prupe.6G350700 Prunus persica HOM05D003473 ORTHO05D003872 2.6e-149 532.7 424 64.2
Duzib128G0977 Durio zibethinus HOM05D003473 ORTHO05D003872 4.4e-149 531.9 429 63.2
Oeu014529.1 Olea europaea HOM05D003473 ORTHO05D003872 4.4e-149 531.9 426 62.4
TWI36G0550 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 9.7e-149 530.8 423 62.9
TWI56G1190 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 2.2e-148 529.6 423 62.4
Gohir.D11G256800 Gossypium hirsutum HOM05D003473 ORTHO05D003872 3.1e-147 525.8 427 62.3
Gohir.A11G246500 Gossypium hirsutum HOM05D003473 ORTHO05D003872 5.3e-147 525.0 427 62.3
Duzib177G0657 Durio zibethinus HOM05D003473 ORTHO05D003872 7.0e-147 524.6 427 61.6
Psat3g006840 Pisum sativum HOM05D003473 ORTHO05D003872 9.1e-147 524.2 346 71.1
PGR142G0316 Punica granatum HOM05D003473 ORTHO05D003872 9.1e-147 524.2 424 62.3
Gorai.007G275200 Gossypium raimondii HOM05D003473 ORTHO05D003872 1.2e-146 523.9 427 62.1
Lj3g0009325 Lotus japonicus HOM05D003473 ORTHO05D003872 1.2e-146 523.9 431 63.6
MELO3C008699.2 Cucumis melo HOM05D003473 ORTHO05D003872 5.9e-146 521.5 424 61.3
TAR362G0719 Trochodendron aralioides HOM05D003473 ORTHO05D003872 1.0e-145 520.8 430 60.0
MSTRG.8227 Avicennia marina HOM05D003473 ORTHO05D003872 3.8e-145 518.8 419 61.3
CsaV3_2G009860 Cucumis sativus L. HOM05D003473 ORTHO05D003872 3.8e-145 518.8 426 61.3
CSS0019381 Camellia sinensis var. sinensis HOM05D003473 ORTHO05D003872 5.0e-145 518.5 426 61.0
Peaxi162Scf00718g00014 Petunia axillaris HOM05D003473 ORTHO05D003872 1.5e-144 516.9 421 62.5
SalBow6G1341 Salvia bowleyana HOM05D003473 ORTHO05D003872 2.5e-144 516.2 409 62.3
PGSC0003DMG400028063 Solanum tuberosum HOM05D003473 ORTHO05D003872 3.2e-144 515.8 418 62.4
Lj2C44G25 Lonicera japonica HOM05D003473 ORTHO05D003872 7.2e-144 514.6 419 61.1
COL.COLO4_15495 Corchorus olitorius HOM05D003473 ORTHO05D003872 1.6e-143 513.5 428 61.0
ECA238G4809 Erigeron canadensis HOM05D003473 ORTHO05D003872 1.0e-142 510.8 408 60.0
AUR62040917 Chenopodium quinoa HOM05D003473 ORTHO05D003872 2.3e-142 509.6 417 60.7
ClCG11G010530 Citrullus lanatus HOM05D003473 ORTHO05D003872 1.2e-141 507.3 423 59.6
Sed0013546 Sechium edule HOM05D003473 ORTHO05D003872 2.6e-141 506.1 421 61.3
HanXRQChr14g0454231 Helianthus annuus HOM05D003473 ORTHO05D003872 7.5e-141 504.6 408 59.3
Eucgr.B02153 Eucalyptus grandis HOM05D003473 ORTHO05D003872 4.8e-140 501.9 423 59.6
Ca_09457_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 8.3e-140 501.1 347 69.2
vmacro10372 Vaccinium macrocarpon HOM05D003473 ORTHO05D003872 4.1e-139 498.8 481 55.5
EL10Ac4g08995 Beta vulgaris HOM05D003473 ORTHO05D003872 5.4e-139 498.4 416 59.4
FAN05G0941 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.7e-138 496.1 425 61.6
FAN05G2419 Fragaria x ananassa HOM05D003473 ORTHO05D003872 4.5e-138 495.4 425 61.9
AUR62004830 Chenopodium quinoa HOM05D003473 ORTHO05D003872 1.0e-137 494.2 418 60.3
MSTRG.314 Avicennia marina HOM05D003473 ORTHO05D003872 1.7e-137 493.4 430 59.3
RcHm_v2.0_Chr3g0449501 Rosa chinensis HOM05D003473 ORTHO05D003872 1.7e-137 493.4 426 60.3
FvH4_6g01760 Fragaria vesca HOM05D003473 ORTHO05D003872 2.9e-137 492.7 425 61.4
FAN09G4673 Fragaria x ananassa HOM05D003473 ORTHO05D003872 8.6e-137 491.1 425 61.2
FAN14G5108 Fragaria x ananassa HOM05D003473 ORTHO05D003872 1.5e-136 490.3 425 61.2
Hma1.2p1_1007F.1_g247120 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 1.9e-136 490.0 431 56.8
Migut.F01540 Erythranthe guttata HOM05D003473 ORTHO05D003872 3.3e-136 489.2 412 58.7
FAN14G1733 Fragaria x ananassa HOM05D003473 ORTHO05D003872 9.5e-136 487.6 425 60.9
SGA_v2.0_scaffold2G01010 Striga asiatica HOM05D003473 ORTHO05D003872 1.8e-134 483.4 424 56.6
GSVIVG01023451001 Vitis vinifera HOM05D003473 ORTHO05D003872 5.2e-134 481.9 401 61.1
Aqoxy2G03708 Aquilegia oxysepala HOM05D003473 ORTHO05D003872 1.5e-133 480.3 431 58.7
Nn1g02856 Nelumbo nucifera HOM05D003473 ORTHO05D003872 4.4e-133 478.8 432 58.6
PSO017G4386 Papaver somniferum HOM05D003473 ORTHO05D003872 9.8e-133 477.6 429 57.8
Lsat_1_v5_gn_2_108280 Lactuca sativa HOM05D003473 ORTHO05D003872 1.3e-132 477.2 410 58.3
Cc02_g08740 Coffea canephora HOM05D003473 ORTHO05D003872 6.3e-132 474.9 418 57.2
Cpa.g.sc306.6 Carica papaya HOM05D003473 ORTHO05D003872 8.6e-129 464.5 346 64.7
THA.LOC104820771 Tarenaya hassleriana HOM05D003473 ORTHO05D003872 1.2e-127 460.7 426 54.7
Eucgr.B02152 Eucalyptus grandis HOM05D003473 ORTHO05D003872 2.8e-127 459.5 423 56.3
Sabra13G0043500 Salix brachista HOM05D003473 ORTHO05D003872 6.8e-126 454.9 444 54.7
HPP92_020845 Vanilla planifolia HOM05D003473 ORTHO05D003872 2.9e-124 449.5 427 52.9
Oeu014528.1 Olea europaea HOM05D003473 ORTHO05D003872 1.4e-123 447.2 319 65.2
Sc20g0000670 Simmondsia chinensis HOM05D003473 ORTHO05D003872 5.4e-123 445.3 349 61.6
BraA06t26728Z Brassica rapa HOM05D003473 ORTHO05D003872 1.6e-122 443.7 417 56.4
A06p38150 Brassica napus HOM05D003473 ORTHO05D003872 3.5e-122 442.6 417 56.1
MBI07_g22622_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 3.9e-121 439.1 420 56.0
BcaNung02116 Brassica carinata HOM05D003473 ORTHO05D003872 6.6e-121 438.3 417 55.9
C07p40060 Brassica napus HOM05D003473 ORTHO05D003872 6.6e-121 438.3 417 55.9
BolC7t44541H Brassica oleracea HOM05D003473 ORTHO05D003872 6.6e-121 438.3 417 55.9
DCAR_030978 Daucus carota HOM05D003473 ORTHO05D003872 6.6e-121 438.3 443 53.7
Thhalv10003947m.g Eutrema salsugineum HOM05D003473 ORTHO05D003872 4.3e-120 435.6 415 54.5
CARHR185420 Cardamine hirsuta HOM05D003473 ORTHO05D003872 9.5e-120 434.5 421 55.3
AL6G40940 Arabidopsis lyrata HOM05D003473 ORTHO05D003872 1.6e-119 433.7 421 53.7
Sopen06g012690 Solanum pennellii HOM05D003473 ORTHO05D003872 2.1e-119 433.3 418 56.2
Sp2g19990 Schrenkiella parvula HOM05D003473 ORTHO05D003872 2.8e-119 433.0 418 54.1
C09p05430 Brassica napus HOM05D003473 ORTHO05D003872 3.1e-118 429.5 419 55.1
Solyc06g036640.4 Solanum lycopersicum HOM05D003473 ORTHO05D003872 3.1e-118 429.5 418 55.7
BcaC04g23717 Brassica carinata HOM05D003473 ORTHO05D003872 4.0e-118 429.1 419 54.7
BolC9t53472H Brassica oleracea HOM05D003473 ORTHO05D003872 1.5e-117 427.2 419 53.9
BraA09t36141Z Brassica rapa HOM05D003473 ORTHO05D003872 2.0e-117 426.8 417 54.0
Aa31LG11G8510 Aethionema arabicum HOM05D003473 ORTHO05D003872 4.4e-117 425.6 403 53.8
BcaC06g30691 Brassica carinata HOM05D003473 ORTHO05D003872 4.4e-117 425.6 407 54.3
unitig_749.g14017 Utricularia gibba HOM05D003473 ORTHO05D003872 5.8e-117 425.2 375 55.7
Carub.0006s2613 Capsella rubella HOM05D003473 ORTHO05D003872 7.5e-117 424.9 414 54.1
A09p05020 Brassica napus HOM05D003473 ORTHO05D003872 2.2e-116 423.3 415 53.7
PSO063G4417 Papaver somniferum HOM05D003473 ORTHO05D003872 2.4e-115 419.9 424 50.9
Carub.0007s3766 Capsella rubella HOM05D003473 ORTHO05D003872 1.6e-114 417.2 415 53.0
AT5G28960 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 2.1e-111 406.8 421 51.5
BcaB04g19636 Brassica carinata HOM05D003473 ORTHO05D003872 1.4e-110 404.1 421 52.0
ATR0736G092 Amborella trichopoda HOM05D003473 ORTHO05D003872 8.9e-110 401.4 429 50.3
Carub.0006s2614 Capsella rubella HOM05D003473 ORTHO05D003872 1.2e-109 401.0 417 50.8
Aa31LG5G14900 Aethionema arabicum HOM05D003473 ORTHO05D003872 4.9e-108 395.6 415 49.6
Os02g0809500 Oryza sativa ssp. japonica HOM05D003473 ORTHO05D003872 4.9e-108 395.6 422 48.6
DCAR_030022 Daucus carota HOM05D003473 ORTHO05D003872 1.0e-105 387.9 437 49.0
Sabra19G0032100 Salix brachista HOM05D003473 ORTHO05D003872 1.1e-104 384.4 374 54.5
Actinidia38934 Actinidia chinensis HOM05D003473 ORTHO05D003872 2.4e-102 376.7 321 58.3
CDE08G1169 Ceratophyllum demersum HOM05D003473 ORTHO05D003872 6.4e-100 368.6 405 48.4
Carub.0048s0001 Capsella rubella HOM05D003473 ORTHO05D003872 7.8e-98 361.7 406 48.8
Carub.0006s2615 Capsella rubella HOM05D003473 ORTHO05D003872 1.5e-93 347.4 389 47.8
Eucgr.B02425 Eucalyptus grandis HOM05D003473 ORTHO05D003872 7.8e-90 335.1 216 69.0
AT5G28910 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 1.1e-88 331.3 214 69.6
SMO351G0042 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 6.0e-74 282.3 317 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2742 Anthoceros agrestis HOM05D003473 ORTHO05D003872 4.0e-70 269.6 325 42.8
AagrBONN_evm.TU.Sc2ySwM_228.1748 Anthoceros agrestis HOM05D003473 ORTHO05D003872 2.0e-69 267.3 278 44.2
CBR_g34948 Chara braunii HOM05D003473 ORTHO05D003872 1.1e-67 261.5 285 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1715 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.2e-66 258.1 279 41.9
SMO116G0126 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 3.5e-66 256.5 290 42.8
AagrBONN_evm.TU.Sc2ySwM_228.1714 Anthoceros agrestis HOM05D003473 ORTHO05D003872 8.7e-65 251.9 331 40.2
SMO351G0391 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.1e-64 251.5 212 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2023 Anthoceros agrestis HOM05D003473 ORTHO05D003872 2.5e-64 250.4 287 41.8
FAN02G1417 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.2e-63 247.3 181 65.7
CBR_g57532 Chara braunii HOM05D003473 ORTHO05D003872 1.4e-62 244.6 282 39.4
SMO145G0097 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 7.7e-61 238.8 336 37.8
SMO241G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 6.9e-54 215.7 312 37.8
SMO241G0019 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 9.1e-54 215.3 220 46.4
SMO232G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.5e-53 214.5 295 38.3
CBR_g48364 Chara braunii HOM05D003473 ORTHO05D003872 1.7e-52 211.1 301 37.2
SMO347G0181 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.5e-51 207.2 311 36.7
SMO232G0037 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.2e-50 204.9 281 39.5
CBR_g1013 Chara braunii HOM05D003473 ORTHO05D003872 3.6e-50 203.4 287 38.0
CBR_g23900 Chara braunii HOM05D003473 ORTHO05D003872 7.9e-50 202.2 309 36.6
CBR_g48367 Chara braunii HOM05D003473 ORTHO05D003872 1.8e-49 201.1 305 37.7
RhsimUnG0155700 Rhododendron simsii HOM05D003473 ORTHO05D003872 5.1e-49 199.5 209 53.6
SGA_v2.0_scaffold158G37446 Striga asiatica HOM05D003473 ORTHO05D003872 5.7e-48 196.1 142 64.8
SMO232G0128 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.7e-47 194.5 213 44.1
RhsimUnG0083500 Rhododendron simsii HOM05D003473 ORTHO05D003872 6.3e-47 192.6 209 52.2
SMO241G0014 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 8.2e-47 192.2 213 43.2
CBR_g40386 Chara braunii HOM05D003473 ORTHO05D003872 7.0e-46 189.1 291 34.4
SMO232G0138 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.0e-45 187.6 246 43.5
DCAR_030014 Daucus carota HOM05D003473 ORTHO05D003872 6.5e-44 182.6 171 53.8
Glyma.19G247901 Glycine max HOM05D003473 ORTHO05D003872 1.2e-42 178.3 208 53.8
GSVIVG01023448001 Vitis vinifera HOM05D003473 ORTHO05D003872 2.1e-42 177.6 119 70.6
SEGI_32914 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 2.2e-39 167.5 129 56.6
Rhsim09G0135200 Rhododendron simsii HOM05D003473 ORTHO05D003872 6.3e-39 166.0 284 39.4
Rhsim09G0136100 Rhododendron simsii HOM05D003473 ORTHO05D003872 9.1e-38 162.2 207 47.8
SGA_v2.0_scaffold18G08388 Striga asiatica HOM05D003473 ORTHO05D003872 2.0e-37 161.0 111 64.0
SMO235G0055 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.2e-36 157.5 311 33.1
Rhsim09G0136200 Rhododendron simsii HOM05D003473 ORTHO05D003872 4.2e-35 153.3 214 45.3
Rhsim09G0136400 Rhododendron simsii HOM05D003473 ORTHO05D003872 4.2e-35 153.3 231 45.0
Rhsim09G0136000 Rhododendron simsii HOM05D003473 ORTHO05D003872 2.1e-34 151.0 200 48.0
Rhsim09G0136500 Rhododendron simsii HOM05D003473 ORTHO05D003872 1.0e-33 148.7 192 46.9
SGA_v2.0_scaffold26G11350 Striga asiatica HOM05D003473 ORTHO05D003872 1.7e-31 141.4 176 44.9
SMO232G0114 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.4e-30 138.3 282 30.9
SMO241G0018 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.4e-30 136.3 213 37.1
Rhsim09G0135600 Rhododendron simsii HOM05D003473 ORTHO05D003872 6.3e-23 112.8 135 44.4
SMO241G0005 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.4e-22 111.7 149 38.3
MBI07_g31076_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 2.4e-22 110.9 141 46.8
Rhsim09G0136600 Rhododendron simsii HOM05D003473 ORTHO05D003872 1.0e-17 95.5 100 47.0
SGA_v2.0_scaffold158G37441 Striga asiatica HOM05D003473 ORTHO05D003872 4.0e-17 93.6 76 53.9
Actinidia38935 Actinidia chinensis HOM05D003473 ORTHO05D003872 5.9e-13 79.7 50 72.0
SGA_v2.0_scaffold90G27648 Striga asiatica HOM05D003473 ORTHO05D003872 8.6e-12 75.9 109 39.4
MBI07_g26633_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 2.6e-08 64.3 140 34.3
SEGI_25367 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 2.4e-06 57.8 41 63.4


User provided reference genes

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