Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.3e-104 381.7 196 100.0
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 8.1e-66 254.2 204 71.1
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 8.1e-58 227.6 191 67.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.4e-46 190.3 193 56.5
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.9e-44 182.2 188 58.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.9e-43 179.9 206 53.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 9.6e-43 177.6 199 52.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.2e-40 170.6 191 52.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-40 169.9 203 52.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 9.9e-40 167.5 118 73.7
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 6.4e-39 164.9 192 51.6
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 4.2e-38 162.2 183 51.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.2e-38 162.2 195 51.3
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.4e-38 161.8 190 50.5
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.9e-36 155.6 187 50.3
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 8.7e-36 154.5 197 47.2
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-34 149.8 193 47.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.7e-34 149.1 205 47.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.4e-33 147.1 204 47.5
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.3e-33 145.2 162 53.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.5e-32 143.7 186 47.8
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-32 143.7 196 46.4
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.6e-32 142.9 205 43.9
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.5e-32 142.1 196 47.4
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.8e-32 141.7 198 45.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.3e-31 140.6 196 45.9
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.3e-31 140.6 189 48.1
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.7e-31 140.2 201 44.3
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-31 140.2 202 46.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-31 140.2 193 45.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.7e-31 140.2 186 46.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.9e-31 139.4 192 43.2
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.8e-31 139.0 194 46.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 4.9e-31 138.7 195 46.2
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 7.1e-30 134.8 195 45.1
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.3e-30 134.4 191 46.6
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.6e-29 133.7 191 46.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 2.1e-29 133.3 193 47.2
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.1e-29 133.3 195 44.1
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.1e-29 133.3 187 42.8
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.1e-29 133.3 190 45.3
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.5e-29 132.5 191 46.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.5e-29 132.5 205 45.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 6.0e-29 131.7 194 42.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 7.9e-29 131.3 190 43.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.0e-28 131.0 199 43.7
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.8e-28 130.2 188 42.6
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 3.0e-28 129.4 198 44.4
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.0e-28 129.4 192 42.7
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 5.1e-28 128.6 183 43.2
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 5.1e-28 128.6 189 43.4
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.7e-28 128.3 198 44.4
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.7e-28 128.3 197 44.7
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.5e-27 127.1 194 43.8
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.9e-27 126.7 197 43.1
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.9e-27 126.7 199 43.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-27 126.7 197 43.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.3e-27 125.9 179 42.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.6e-27 125.2 199 43.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 9.6e-27 124.4 196 43.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.6e-27 124.4 196 43.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.6e-27 124.4 196 43.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-26 123.6 199 42.7
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 3.7e-26 122.5 203 43.8
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 4.8e-26 122.1 197 40.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 8.2e-26 121.3 203 41.9
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 8.2e-26 121.3 191 41.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.2e-26 121.3 198 41.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 8.2e-26 121.3 197 42.1
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.2e-26 121.3 197 42.1
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 1.1e-25 120.9 201 40.3
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.4e-25 120.6 209 38.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.4e-25 120.6 189 42.3
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 5.3e-25 118.6 199 41.2
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.3e-25 118.6 185 41.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.9e-25 118.2 203 41.4
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.9e-25 118.2 220 38.6
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.6e-24 116.3 199 40.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.6e-24 116.3 189 42.9
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.4e-24 115.9 192 41.1
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 4.5e-24 115.5 195 39.5
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 4.5e-24 115.5 192 42.7
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.8e-24 115.2 177 43.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 5.8e-24 115.2 176 39.8
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 5.8e-24 115.2 190 41.1
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 7.6e-24 114.8 200 41.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.0e-23 114.4 178 39.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.7e-23 113.6 192 38.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.9e-23 112.8 177 41.2
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.9e-23 112.8 189 42.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 4.9e-23 112.1 193 39.9
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.5e-23 111.7 186 43.5
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 6.5e-23 111.7 184 40.8
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.4e-23 111.3 177 42.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-22 110.9 187 38.5
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-22 110.9 179 43.0
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-22 110.5 177 41.8
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-22 110.2 194 41.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.9e-22 110.2 198 39.9
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 2.5e-22 109.8 193 40.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.5e-22 109.8 184 44.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 3.2e-22 109.4 189 39.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.2e-22 109.0 191 41.4
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.5e-22 108.6 188 41.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.5e-22 108.6 190 38.9
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 7.1e-22 108.2 186 40.3
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 7.1e-22 108.2 195 42.6
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 9.3e-22 107.8 194 37.1
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.3e-22 107.8 188 42.6
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.3e-22 107.8 188 42.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.2e-21 107.5 193 38.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-21 107.1 192 39.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.1e-21 106.7 206 37.9
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.7e-21 106.3 224 35.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.7e-21 106.3 174 38.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 4.6e-21 105.5 183 41.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 4.6e-21 105.5 139 43.9
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 6.0e-21 105.1 150 42.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 6.0e-21 105.1 178 41.6
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 7.9e-21 104.8 180 40.0
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.9e-21 104.8 205 40.5
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.3e-20 104.0 210 34.3
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.3e-20 104.0 193 40.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.8e-20 103.6 178 40.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 3.0e-20 102.8 183 38.3
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.9e-20 102.4 188 37.2
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.1e-20 102.1 179 39.7
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 8.7e-20 101.3 197 37.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-19 100.5 192 37.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.9e-19 100.1 156 39.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.9e-19 100.1 211 36.5
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.5e-19 99.8 229 34.9
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.3e-19 99.0 156 41.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-19 98.6 187 39.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.7e-19 98.6 197 37.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.7e-19 97.8 202 39.1
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-18 97.1 173 41.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-18 97.1 177 39.5
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.6e-18 97.1 196 39.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-18 96.7 174 39.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.2e-18 96.7 123 48.0
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.8e-18 96.3 214 35.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.8e-18 96.3 160 37.5
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.7e-18 95.9 191 34.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.8e-18 95.5 193 38.3
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.3e-18 95.1 131 42.7
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-17 94.4 208 36.5
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-17 94.0 175 38.3
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-17 93.2 214 34.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.4e-17 93.2 144 38.2
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 3.1e-17 92.8 174 39.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.1e-17 92.4 214 34.6
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.1e-17 92.4 190 38.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.3e-17 92.0 226 35.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 6.9e-17 91.7 203 36.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 9.0e-17 91.3 194 40.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.2e-15 86.7 279 30.5
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.9e-15 86.3 176 38.6
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 6.5e-15 85.1 117 41.9
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 8.5e-15 84.7 222 34.7
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 8.5e-15 84.7 222 34.7
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.5e-15 84.7 191 38.2
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-14 84.3 223 34.5
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.2e-14 82.8 183 36.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 4.2e-14 82.4 184 35.9
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.5e-14 82.0 180 37.8
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.2e-14 81.6 183 36.1
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 7.2e-14 81.6 157 35.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 9.4e-14 81.3 184 35.3
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-13 80.5 184 35.3
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.7e-13 79.7 192 37.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 3.6e-13 79.3 140 32.9
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.1e-13 78.6 182 34.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 7.9e-13 78.2 140 35.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.9e-12 75.9 113 39.8
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.3e-11 72.4 189 34.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.1e-09 67.8 165 33.3
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.1e-09 64.7 80 46.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-08 64.3 165 33.3
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.0e-07 61.2 67 47.8
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.2e-07 60.1 67 44.8
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 4.2e-06 55.8 39 64.1


User provided reference genes

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