Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 1.0e-73 280.0 147 100.0
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 9.3e-67 256.9 147 89.8
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 3.6e-58 228.4 144 82.6
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 6.1e-58 227.6 147 83.0
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 4.4e-48 194.9 149 71.8
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 1.2e-45 186.8 150 70.0
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 6.5e-44 181.0 130 74.6
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.1e-43 180.3 129 76.0
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.4e-43 179.9 142 68.3
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.9e-43 179.5 135 74.8
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 3.2e-43 178.7 130 73.1
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 4.2e-43 178.3 149 69.8
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 5.5e-43 177.9 129 75.2
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 5.5e-43 177.9 128 75.0
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 7.2e-43 177.6 158 65.8
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 9.4e-43 177.2 129 73.6
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 9.4e-43 177.2 150 67.3
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 1.6e-42 176.4 128 74.2
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 2.1e-42 176.0 128 74.2
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.7e-42 175.6 131 74.0
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 2.7e-42 175.6 128 74.2
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 2.7e-42 175.6 135 71.1
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 3.6e-42 175.3 142 67.6
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 4.7e-42 174.9 131 74.8
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 4.7e-42 174.9 153 66.0
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 6.1e-42 174.5 134 73.1
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 6.1e-42 174.5 132 75.0
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 6.1e-42 174.5 142 70.4
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 6.1e-42 174.5 150 65.3
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 6.1e-42 174.5 126 73.8
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 6.1e-42 174.5 124 75.8
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 8.0e-42 174.1 136 72.1
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 8.0e-42 174.1 132 69.7
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 1.0e-41 173.7 153 67.3
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.0e-41 173.7 137 67.9
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 1.4e-41 173.3 138 68.1
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.8e-41 172.9 152 63.8
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 2.3e-41 172.6 140 68.6
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 3.0e-41 172.2 131 74.0
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 3.0e-41 172.2 135 69.6
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 3.0e-41 172.2 142 66.9
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 3.9e-41 171.8 153 67.3
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 3.9e-41 171.8 124 71.8
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 3.9e-41 171.8 147 66.7
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 3.9e-41 171.8 150 64.0
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 3.9e-41 171.8 145 68.3
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 5.2e-41 171.4 126 70.6
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 1.1e-40 170.2 148 63.5
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 1.1e-40 170.2 115 76.5
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.1e-40 170.2 115 76.5
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.1e-40 170.2 143 65.0
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.1e-40 170.2 142 66.2
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.1e-40 170.2 141 66.0
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 1.1e-40 170.2 129 70.5
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.1e-40 170.2 126 74.6
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 1.5e-40 169.9 145 66.2
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.5e-40 169.9 129 70.5
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.0e-40 169.5 143 65.7
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.0e-40 169.5 143 65.7
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.0e-40 169.5 143 65.7
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.0e-40 169.5 141 65.2
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 2.0e-40 169.5 153 66.0
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.6e-40 169.1 154 64.3
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.6e-40 169.1 139 67.6
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 3.3e-40 168.7 132 71.2
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 5.7e-40 167.9 129 71.3
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 5.7e-40 167.9 129 71.3
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 7.4e-40 167.5 148 64.2
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 1.7e-39 166.4 128 68.8
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.7e-39 166.4 150 62.0
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.7e-39 166.4 124 68.5
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.2e-39 166.0 131 67.9
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 2.2e-39 166.0 118 75.4
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 3.7e-39 165.2 124 67.7
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 3.7e-39 165.2 115 73.9
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 4.8e-39 164.9 137 65.0
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 4.8e-39 164.9 116 69.8
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 4.8e-39 164.9 147 61.9
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 6.3e-39 164.5 120 72.5
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 8.2e-39 164.1 142 64.1
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 8.2e-39 164.1 116 72.4
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 1.1e-38 163.7 129 67.4
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.1e-38 163.7 122 68.9
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.1e-38 163.7 120 75.0
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 1.1e-38 163.7 151 62.9
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.4e-38 163.3 130 66.2
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.8e-38 162.9 120 75.0
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.4e-38 162.5 150 64.0
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 2.4e-38 162.5 142 65.5
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 3.1e-38 162.2 118 72.0
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.3e-38 161.4 117 68.4
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 7.0e-38 161.0 149 62.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 9.1e-38 160.6 120 72.5
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 9.1e-38 160.6 121 67.8
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.2e-37 160.2 148 63.5
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 2.6e-37 159.1 130 69.2
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 4.5e-37 158.3 143 63.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 5.9e-37 157.9 113 72.6
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.3e-36 156.8 121 70.2
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 3.8e-36 155.2 162 53.7
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 1.9e-35 152.9 130 63.8
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 1.9e-35 152.9 141 61.0
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 2.5e-35 152.5 150 60.7
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 4.2e-35 151.8 130 63.1
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 4.2e-35 151.8 127 63.8
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 9.4e-35 150.6 78 94.9
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 9.4e-35 150.6 80 92.5
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 3.6e-34 148.7 124 64.5
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 4.7e-34 148.3 133 63.2
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 8.0e-34 147.5 148 53.4
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 8.8e-33 144.1 102 75.5
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 1.3e-31 140.2 115 62.6
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 2.2e-31 139.4 86 77.9
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 2.8e-31 139.0 128 64.1
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 1.4e-30 136.7 109 67.9
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 9.1e-30 134.0 75 84.0
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 6.1e-26 121.3 119 55.5
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.5e-24 116.7 130 53.1
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 2.0e-24 116.3 115 55.7
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 5.7e-24 114.8 114 56.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.3e-23 113.6 118 58.5
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 6.3e-23 111.3 93 62.4
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 1.3e-20 103.6 75 65.3
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 1.7e-20 103.2 75 66.7
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 5.2e-17 91.7 77 58.4
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 5.7e-16 88.2 124 44.4
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 1.3e-07 60.5 36 86.1
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.9e-06 56.6 65 46.2


User provided reference genes

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