Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 2798.8 1450 100.0
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 2462.6 1462 87.5
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 2460.3 1534 84.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 2424.4 1464 86.7
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 2291.2 1459 82.3
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 2251.1 1456 80.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 2219.5 1467 80.5
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2132.5 1506 75.6
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2122.8 1506 75.3
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1890.2 1261 79.5
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1840.5 1467 68.2
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1823.5 1457 67.1
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1813.1 1489 65.7
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1788.9 1460 65.2
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1775.0 1460 65.5
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1774.6 1482 65.2
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1771.5 1465 65.3
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1765.0 1473 64.6
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1744.2 1467 64.3
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1741.5 1456 65.2
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1728.4 1471 63.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1728.0 1471 63.4
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1727.6 1459 64.6
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1727.6 1470 63.5
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1723.8 1469 64.2
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1723.4 1473 63.7
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1701.8 1489 62.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1692.9 1460 62.0
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1676.4 1488 61.2
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1666.7 1470 61.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1665.2 1459 61.7
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1659.4 1469 61.2
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1633.6 1478 59.8
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1628.6 1473 60.9
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1626.7 1463 60.4
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1620.5 1477 60.1
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1615.9 1474 60.4
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1609.7 1445 61.5
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1593.2 1514 60.6
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1539.6 1466 58.1
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1533.1 1470 57.7
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1522.7 1463 59.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1522.7 1483 57.9
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1518.4 1465 58.8
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1515.7 1489 56.7
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1503.8 1476 57.5
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1502.6 1490 57.4
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1502.3 1453 57.6
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1498.8 1465 58.5
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1491.1 1462 57.2
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1490.3 1431 57.4
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1488.8 1472 57.1
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1487.2 1489 56.7
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1477.6 1488 56.7
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1473.4 1473 56.1
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1473.4 1364 60.5
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1471.1 1531 55.6
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1469.5 1485 56.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1467.6 1493 56.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1464.9 1252 64.5
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1461.8 1270 63.4
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1442.2 1472 55.8
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1431.8 1379 57.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1422.5 1455 55.4
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1421.8 1457 55.5
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1416.4 1455 55.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1413.3 1458 55.6
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1405.2 1449 55.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1395.2 1460 54.5
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1393.3 1454 55.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1392.1 1486 54.6
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1389.8 1459 55.0
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1389.0 1408 55.6
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1385.5 1487 54.3
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1043 72.0
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1359.4 1450 53.4
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1352.0 1452 53.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1352.0 1453 53.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1350.1 1450 53.3
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1349.3 1450 53.3
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1348.6 1453 53.2
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1314.3 1389 52.9
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1302.3 1457 53.3
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1300.0 1455 51.7
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1277.7 1315 56.0
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1262.7 1457 49.5
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1255.0 1470 48.6
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1221.8 1106 61.2
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1195.6 1081 62.3
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1171.0 1304 52.9
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1156.4 1358 49.2
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1152.5 1166 55.7
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1145.6 1104 57.6
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1135.9 1142 56.9
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1110.5 928 64.8
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-297 1027.3 1327 47.2
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 4.9e-253 879.0 1531 39.5
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 7.9e-251 871.7 1504 39.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 8.7e-250 868.2 1492 39.9
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 7.6e-246 855.1 1005 50.8
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 3.7e-232 809.7 956 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.1e-231 806.6 1549 36.7
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.5e-206 723.4 529 70.9
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 5.9e-206 722.6 838 49.9
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 6.6e-197 692.6 429 81.1
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.5e-161 575.1 666 52.6
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.2e-159 567.0 1918 29.3
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 3.4e-145 520.8 842 42.9
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 6.0e-142 510.0 581 52.5
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.8e-139 501.1 589 50.9
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 2.1e-131 474.9 446 58.7
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 4.6e-126 457.2 441 57.1
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.3e-109 401.7 1347 29.0
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.0e-88 333.2 229 73.8
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 9.2e-82 310.1 342 49.7
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.4e-76 291.6 395 47.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 2.2e-75 288.9 267 58.4
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.1e-66 260.0 576 35.8
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.5e-63 248.8 260 53.8
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 7.5e-60 237.3 1148 25.7
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.1e-42 180.3 103 89.3
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.7e-41 175.6 164 61.6
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 7.1e-26 124.4 86 70.9
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 3.0e-24 119.0 91 69.2
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 6.7e-24 117.9 94 63.8
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.8e-19 102.1 90 54.4
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 6.0e-17 94.7 73 60.3
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 1.3e-14 87.0 67 58.2
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 3.7e-14 85.5 103 49.5
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 2.4e-13 82.8 89 50.6
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.3e-11 77.0 85 54.1
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.5e-10 72.8 54 63.0
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 6.1e-09 68.2 103 45.6
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 9.7e-07 60.8 53 54.7
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.8e-06 59.3 70 50.0


User provided reference genes

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