Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 7.6e-200 700.3 352 100.0
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 3.3e-118 429.1 342 71.6
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 2.4e-105 386.3 348 65.8
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 1.8e-79 300.4 368 51.9
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 1.3e-77 294.3 362 51.9
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 3.1e-76 289.7 362 51.4
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 4.1e-76 289.3 371 50.9
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 4.1e-76 289.3 362 51.7
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 1.5e-75 287.3 374 49.7
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 2.6e-75 286.6 361 51.2
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.7e-74 283.9 361 51.5
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 1.9e-73 280.4 384 49.0
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 7.2e-73 278.5 361 50.1
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 1.2e-72 277.7 370 50.5
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 1.6e-72 277.3 366 48.6
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 2.7e-72 276.6 346 53.5
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 1.1e-70 271.2 363 49.9
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 9.7e-70 268.1 368 50.8
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 2.2e-69 266.9 364 49.5
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 1.1e-68 264.6 378 46.0
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 6.9e-68 261.9 371 48.8
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 1.2e-67 261.2 343 51.3
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.5e-67 259.2 355 49.0
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 5.9e-67 258.8 358 47.8
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 2.2e-66 256.9 360 47.8
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 8.5e-66 255.0 354 48.3
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 8.5e-66 255.0 354 48.3
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 2.5e-65 253.4 384 48.4
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 4.2e-65 252.7 376 45.2
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 5.5e-65 252.3 361 47.6
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 9.4e-65 251.5 379 48.8
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 2.1e-64 250.4 355 49.6
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 2.7e-64 250.0 373 45.0
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 9.7e-62 241.5 369 43.1
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 6.3e-61 238.8 374 43.6
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.4e-60 237.7 358 45.3
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 5.3e-60 235.7 371 46.9
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.3e-60 235.7 358 45.0
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 9.1e-60 235.0 357 45.4
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 2.0e-59 233.8 357 45.1
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 3.8e-58 229.6 351 45.9
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.0e-58 229.2 358 44.4
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 4.2e-57 226.1 355 43.7
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 4.2e-57 226.1 355 43.7
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 4.2e-57 226.1 371 44.7
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 5.5e-57 225.7 335 48.1
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 9.4e-57 224.9 357 43.4
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.6e-56 224.2 358 44.7
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 1.4e-55 221.1 356 44.9
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 3.0e-55 219.9 354 46.0
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 5.2e-55 219.2 341 46.0
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.5e-54 217.6 358 44.1
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 4.4e-54 216.1 358 44.1
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 9.7e-54 214.9 358 43.3
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 2.8e-53 213.4 361 44.0
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.2e-51 208.0 301 44.9
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 2.0e-51 207.2 347 42.9
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 2.7e-51 206.8 357 40.1
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 2.7e-51 206.8 347 43.8
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 4.5e-51 206.1 298 47.7
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 5.9e-51 205.7 367 43.1
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 7.7e-51 205.3 348 43.4
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 2.9e-50 203.4 338 44.4
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 5.0e-50 202.6 339 41.9
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 6.5e-50 202.2 347 44.1
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 4.2e-49 199.5 371 42.9
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 7.2e-49 198.7 371 41.8
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 6.1e-48 195.7 387 38.8
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 1.0e-47 194.9 339 44.5
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 1.4e-47 194.5 401 39.4
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 2.3e-47 193.7 355 40.6
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 4.4e-46 189.5 350 40.3
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 4.4e-46 189.5 360 37.8
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 9.8e-46 188.3 352 40.6
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 1.7e-45 187.6 365 41.1
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 4.8e-45 186.0 350 40.3
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 8.3e-45 185.3 347 40.3
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.8e-44 184.1 344 40.1
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.8e-44 184.1 344 42.7
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 7.0e-44 182.2 359 36.8
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 9.1e-44 181.8 345 41.4
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 9.1e-44 181.8 359 39.8
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 2.0e-43 180.6 341 43.1
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-43 180.6 341 43.1
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 2.0e-43 180.6 369 39.8
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 2.0e-43 180.6 389 37.0
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 2.7e-43 180.3 355 40.3
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 3.5e-43 179.9 348 40.5
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 2.2e-42 177.2 347 38.3
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 2.9e-42 176.8 348 37.6
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 3.8e-42 176.4 365 40.0
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 3.8e-42 176.4 337 42.4
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 5.0e-42 176.0 337 41.2
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 6.5e-42 175.6 337 41.5
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 6.5e-42 175.6 354 39.3
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 1.5e-41 174.5 336 41.1
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 1.9e-41 174.1 337 41.2
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 1.9e-41 174.1 343 38.5
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 9.5e-41 171.8 370 41.9
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 2.1e-40 170.6 354 40.7
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 2.7e-40 170.2 338 40.5
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 3.6e-40 169.9 347 40.9
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 4.7e-40 169.5 354 38.7
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 4.7e-40 169.5 349 42.4
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.4e-39 167.9 347 39.5
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 4.0e-39 166.4 336 40.5
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 8.8e-39 165.2 346 38.2
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 1.5e-38 164.5 350 38.3
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 1.5e-38 164.5 350 38.3
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 3.4e-38 163.3 360 40.3
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 4.4e-38 162.9 319 39.8
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 7.5e-38 162.2 358 38.5
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 3.7e-37 159.8 357 37.3
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 6.3e-37 159.1 331 38.4
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 8.3e-37 158.7 340 37.1
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 1.4e-36 157.9 345 36.2
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.4e-36 157.9 321 37.4
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 1.8e-36 157.5 301 40.9
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 1.8e-36 157.5 301 40.9
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.4e-36 157.1 312 38.1
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 2.0e-35 154.1 346 37.0
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 1.3e-34 151.4 313 39.3
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 1.3e-34 151.4 313 39.3
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 2.3e-34 150.6 349 35.8
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 6.6e-34 149.1 355 38.0
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 4.3e-33 146.4 336 35.4
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 9.5e-33 145.2 357 34.5
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 2.1e-32 144.1 345 36.5
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 3.6e-32 143.3 347 36.9
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 1.4e-31 141.4 357 35.6
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.8e-31 141.0 349 34.1
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 1.5e-30 137.9 346 35.0
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-30 137.5 353 34.8
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.6e-30 137.1 343 35.9
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 3.4e-30 136.7 358 36.9
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 4.9e-29 132.9 133 56.4
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.1e-28 131.7 354 31.9
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 7.0e-28 129.0 372 34.4
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 9.2e-28 128.6 347 38.0
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 2.0e-27 127.5 353 34.0
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 2.7e-27 127.1 353 33.4
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 2.7e-27 127.1 166 51.8
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 1.3e-26 124.8 357 31.4
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 1.7e-26 124.4 349 34.1
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 8.6e-26 122.1 353 34.0
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 8.6e-26 122.1 267 36.7
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 1.1e-25 121.7 327 34.9
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 2.5e-25 120.6 336 32.7
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 5.6e-25 119.4 342 32.7
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 5.6e-25 119.4 342 32.7
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.6e-25 119.4 317 34.7
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 3.6e-24 116.7 325 32.9
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 1.0e-23 115.2 343 32.9
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.3e-23 114.0 351 30.5
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 3.1e-23 113.6 295 32.2
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.2e-22 111.7 350 32.9
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 2.0e-22 110.9 349 31.2
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 2.6e-22 110.5 330 31.8
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 2.6e-22 110.5 286 33.2
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 2.2e-21 107.5 277 32.9
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 2.4e-20 104.0 152 49.3
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 3.5e-19 100.1 349 29.8
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 3.5e-19 100.1 349 29.8
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 1.3e-18 98.2 351 29.3
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 1.3e-18 98.2 351 29.3
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.7e-18 97.8 276 31.9
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 3.9e-18 96.7 166 41.0
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 5.0e-18 96.3 241 38.2
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 1.1e-17 95.1 250 35.6
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 7.3e-17 92.4 351 29.1
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 5.2e-15 86.3 332 31.0
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 6.8e-15 85.9 335 30.7
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 8.9e-15 85.5 354 30.2
PSO012G0001 Papaver somniferum HOM05D003485 ORTHO05D004004 1.5e-14 84.7 157 36.9
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.7e-13 81.3 162 43.2
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 2.1e-11 74.3 135 39.3
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 2.7e-11 73.9 335 28.4
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 6.0e-11 72.8 109 46.8
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 4.3e-09 66.6 103 43.7
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 2.3e-07 60.8 195 34.9


User provided reference genes

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