Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g064360 Pisum sativum HOM05D000736 ORTHO05D016041 1.5e-56 222.6 116 100.0
Medtr1g069385 Medicago truncatula HOM05D000736 ORTHO05D007707 8.5e-31 137.1 107 70.1
TPR.G17941 Trifolium pratense HOM05D000736 ORTHO05D007707 3.1e-25 118.6 113 64.6
Glyma.10G041100 Glycine max HOM05D000736 ORTHO05D007707 2.6e-24 115.5 101 66.3
Ca_09638_v3 Cicer arietinum L. HOM05D000736 ORTHO05D007707 3.5e-24 115.2 107 67.3
arahy.Tifrunner.gnm1.ann1.T4YVHB Arachis hypogaea HOM05D000736 ORTHO05D007707 7.7e-24 114.0 111 61.3
VMungo0720G0104 Vigna mungo HOM05D000736 ORTHO05D007707 2.9e-23 112.1 105 61.9
Lalb_Chr06g0170771 Lupinus albus HOM05D000736 ORTHO05D007707 1.9e-22 109.4 93 61.3
Lj5g0007920 Lotus japonicus HOM05D000736 ORTHO05D007707 2.1e-21 105.9 107 60.7
Manes.13G064800 Manihot esculenta HOM05D000736 ORTHO05D007707 3.6e-21 105.1 111 54.1
Glyma.13G128000 Glycine max HOM05D000736 ORTHO05D007707 4.7e-21 104.8 101 62.4
Phvul.007G154300 Phaseolus vulgaris HOM05D000736 ORTHO05D007707 4.7e-21 104.8 105 55.2
CsaV3_6G015580 Cucumis sativus L. HOM05D000736 ORTHO05D007707 1.4e-20 103.2 98 57.1
ClCG02G018200 Citrullus lanatus HOM05D000736 ORTHO05D007707 1.8e-20 102.8 101 56.4
QL08p029882 Quercus lobata HOM05D000736 ORTHO05D007707 1.8e-20 102.8 88 62.5
TWI75G0266 Tripterygium wilfordii HOM05D000736 ORTHO05D007707 3.0e-20 102.1 93 61.3
Eucgr.K00728 Eucalyptus grandis HOM05D000736 ORTHO05D007707 6.8e-20 100.9 96 54.2
Cfa014296 Carpinus fangiana HOM05D000736 ORTHO05D007707 8.8e-20 100.5 86 60.5
Cpa.g.sc132.49 Carica papaya HOM05D000736 ORTHO05D007707 1.2e-19 100.1 67 71.6
arahy.Tifrunner.gnm1.ann1.L1XSI7 Arachis hypogaea HOM05D000736 ORTHO05D007707 1.5e-19 99.8 108 60.2
Lsat_1_v5_gn_7_94701 Lactuca sativa HOM05D000736 ORTHO05D007707 1.5e-19 99.8 101 55.4
Eucgr.L03681 Eucalyptus grandis HOM05D000736 ORTHO05D007707 2.6e-19 99.0 96 54.2
SalBow8G3370 Salvia bowleyana HOM05D000736 ORTHO05D007707 2.6e-19 99.0 102 53.9
SGA_v2.0_scaffold478G52232 Striga asiatica HOM05D000736 ORTHO05D007707 2.6e-19 99.0 92 55.4
MSTRG.27459 Avicennia marina HOM05D000736 ORTHO05D007707 3.4e-19 98.6 68 70.6
COL.COLO4_05386 Corchorus olitorius HOM05D000736 ORTHO05D007707 3.4e-19 98.6 92 58.7
FAN05G5831 Fragaria x ananassa HOM05D000736 ORTHO05D007707 3.4e-19 98.6 107 53.3
SalBow4G1832 Salvia bowleyana HOM05D000736 ORTHO05D007707 3.4e-19 98.6 102 53.9
MELO3C019716.2 Cucumis melo HOM05D000736 ORTHO05D007707 4.4e-19 98.2 99 54.5
Oeu043936.2 Olea europaea HOM05D000736 ORTHO05D007707 4.4e-19 98.2 79 59.5
RcHm_v2.0_Chr2g0157571 Rosa chinensis HOM05D000736 ORTHO05D007707 4.4e-19 98.2 74 64.9
PSO210G3553 Papaver somniferum HOM05D000736 ORTHO05D007707 7.5e-19 97.4 107 49.5
Aqoxy1G04108 Aquilegia oxysepala HOM05D000736 ORTHO05D007707 1.3e-18 96.7 87 51.7
CANSAT64G0309 Cannabis sativa HOM05D000736 ORTHO05D007707 1.3e-18 96.7 102 50.0
MD09G1117200 Malus domestica HOM05D000736 ORTHO05D007707 1.3e-18 96.7 68 67.6
Thecc.01G187600 Theobroma cacao HOM05D000736 ORTHO05D007707 1.3e-18 96.7 99 53.5
FAN14G0144 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.7e-18 96.3 107 51.4
Gohir.A11G151800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 2.2e-18 95.9 92 57.6
HanXRQChr16g0508321 Helianthus annuus HOM05D000736 ORTHO05D007707 2.2e-18 95.9 92 53.3
GSVIVG01030537001 Vitis vinifera HOM05D000736 ORTHO05D007707 2.2e-18 95.9 92 57.6
CSS0049875 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 2.8e-18 95.5 110 51.8
Sabra02G0171100 Salix brachista HOM05D000736 ORTHO05D007707 3.7e-18 95.1 67 67.2
Atru.chr6.3280 Acer truncatum HOM05D000736 ORTHO05D007707 4.8e-18 94.7 113 51.3
Gorai.007G169200 Gossypium raimondii HOM05D000736 ORTHO05D007707 4.8e-18 94.7 92 56.5
Atru.chr6.3296 Acer truncatum HOM05D000736 ORTHO05D007707 6.3e-18 94.4 112 48.2
Migut.F02001 Erythranthe guttata HOM05D000736 ORTHO05D007707 6.3e-18 94.4 107 49.5
Gohir.D11G158800 Gossypium hirsutum HOM05D000736 ORTHO05D007707 6.3e-18 94.4 92 56.5
Lj1A785G51 Lonicera japonica HOM05D000736 ORTHO05D007707 6.3e-18 94.4 101 53.5
Potri.002G219500 Populus trichocarpa HOM05D000736 ORTHO05D007707 6.3e-18 94.4 109 53.2
vmacro12143 Vaccinium macrocarpon HOM05D000736 ORTHO05D007707 6.3e-18 94.4 92 54.3
EL10Ac9g22789 Beta vulgaris HOM05D000736 ORTHO05D007707 8.3e-18 94.0 107 51.4
PSO302G0194 Papaver somniferum HOM05D000736 ORTHO05D007707 8.3e-18 94.0 108 50.0
Duzib133G0031 Durio zibethinus HOM05D000736 ORTHO05D007707 1.4e-17 93.2 65 67.7
MBI13_g30073_MAGBIO Magnolia biondii HOM05D000736 ORTHO05D007707 1.8e-17 92.8 100 50.0
Sopen07g024970 Solanum pennellii HOM05D000736 ORTHO05D007707 3.1e-17 92.0 91 51.6
AL3G42180 Arabidopsis lyrata HOM05D000736 ORTHO05D007707 5.3e-17 91.3 67 67.2
Dinv08704 Davidia involucrata HOM05D000736 ORTHO05D007707 5.3e-17 91.3 92 55.4
Sed0016142 Sechium edule HOM05D000736 ORTHO05D007707 5.3e-17 91.3 86 55.8
TAR624G0711 Trochodendron aralioides HOM05D000736 ORTHO05D007707 5.3e-17 91.3 101 48.5
Ah.01g001800 Amaranthus hybridus HOM05D003198 ORTHO05D007707 7.0e-17 90.9 93 51.6
Ciclev10015116m.g Citrus clementina HOM05D000736 ORTHO05D007707 7.0e-17 90.9 107 50.5
Hma1.2p1_0133F.1_g060840 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 7.0e-17 90.9 67 64.2
Nitab4.5_0008746g0030 Nicotiana tabacum HOM05D000736 ORTHO05D007707 7.0e-17 90.9 84 56.0
Hund24130 Selenicereus undatus HOM05D000736 ORTHO05D007707 7.0e-17 90.9 73 57.5
Hma1.2p1_0133F.1_g060830 Hydrangea macrophylla HOM05D000736 ORTHO05D007707 1.2e-16 90.1 92 55.4
PGR004G0976 Punica granatum HOM05D000736 ORTHO05D007707 1.2e-16 90.1 107 49.5
Solyc07g049570.3 Solanum lycopersicum HOM05D000736 ORTHO05D007707 1.6e-16 89.7 85 52.9
PGSC0003DMG400006426 Solanum tuberosum HOM05D000736 ORTHO05D007707 1.6e-16 89.7 85 52.9
CAN.G741.31 Capsicum annuum HOM05D000736 ORTHO05D007707 2.0e-16 89.4 67 62.7
Nn1g07966 Nelumbo nucifera HOM05D000736 ORTHO05D007707 2.0e-16 89.4 105 50.5
AT2G04540 Arabidopsis thaliana HOM05D000736 ORTHO05D007707 2.7e-16 89.0 107 51.4
Sp3g23320 Schrenkiella parvula HOM05D000736 ORTHO05D007707 4.5e-16 88.2 102 52.9
CAN.G784.5 Capsicum annuum HOM05D000736 ORTHO05D007707 5.9e-16 87.8 67 61.2
Thhalv10002523m.g Eutrema salsugineum HOM05D000736 ORTHO05D007707 5.9e-16 87.8 67 65.7
unitig_85.g27432 Utricularia gibba HOM05D000736 ORTHO05D007707 7.7e-16 87.4 92 52.2
Haze_12744 Corylus avellana HOM05D000736 ORTHO05D007707 1.3e-15 86.7 65 63.1
FAN02G0028 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.3e-15 86.7 64 60.9
BcaC01g03196 Brassica carinata HOM05D000736 ORTHO05D007707 1.7e-15 86.3 105 49.5
BolC3t17774H Brassica oleracea HOM05D000736 ORTHO05D007707 1.7e-15 86.3 105 49.5
Nitab4.5_0000130g0180 Nicotiana tabacum HOM05D000736 ORTHO05D007707 1.7e-15 86.3 93 49.5
THA.LOC104808867 Tarenaya hassleriana HOM05D000736 ORTHO05D007707 1.7e-15 86.3 67 62.7
ATR1101G028 Amborella trichopoda HOM05D000736 ORTHO05D007707 2.9e-15 85.5 86 50.0
Psat6g215480 Pisum sativum HOM05D000736 ORTHO05D016041 3.8e-15 85.1 64 68.8
BcaB08g34480 Brassica carinata HOM05D000736 ORTHO05D007707 5.0e-15 84.7 67 64.2
Cc04_g10360 Coffea canephora HOM05D000736 ORTHO05D007707 5.0e-15 84.7 67 59.7
Aa31sc76G30 Aethionema arabicum HOM05D000736 ORTHO05D007707 6.5e-15 84.3 92 53.3
FAN09G3712 Fragaria x ananassa HOM05D000736 ORTHO05D007707 1.1e-14 83.6 63 58.7
Peaxi162Scf01333g00134 Petunia axillaris HOM05D000736 ORTHO05D007707 1.1e-14 83.6 65 60.0
Sc20g0005080 Simmondsia chinensis HOM05D000736 ORTHO05D007707 1.5e-14 83.2 73 54.8
AUR62015104 Chenopodium quinoa HOM05D000736 ORTHO05D007707 1.9e-14 82.8 64 60.9
AUR62017566 Chenopodium quinoa HOM05D000736 ORTHO05D007707 2.5e-14 82.4 66 59.1
BraA03t13568Z Brassica rapa HOM05D000736 ORTHO05D007707 5.5e-14 81.3 105 52.4
SEGI_02920 Sequoiadendron giganteum HOM05D000736 ORTHO05D007707 5.5e-14 81.3 92 47.8
A03p44380 Brassica napus HOM05D000736 ORTHO05D007707 9.4e-14 80.5 66 62.1
CDE07G0785 Ceratophyllum demersum HOM05D000736 ORTHO05D007707 1.2e-13 80.1 86 46.5
CiPaw.04G192900 Carya illinoinensis HOM05D000736 ORTHO05D007707 1.6e-13 79.7 58 63.8
MD15G1342600 Malus domestica HOM05D000736 ORTHO05D016041 2.7e-13 79.0 56 64.3
ECA236G4050 Erigeron canadensis HOM05D000736 ORTHO05D007707 6.1e-13 77.8 58 63.8
CSS0040036 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D007707 8.0e-13 77.4 58 62.1
Prupe.3G206600 Prunus persica HOM05D000736 ORTHO05D007707 1.0e-12 77.0 58 62.1
DCAR_019736 Daucus carota HOM05D000736 ORTHO05D007707 4.0e-12 75.1 60 58.3
C03p54990 Brassica napus HOM05D000736 ORTHO05D007707 1.2e-11 73.6 64 57.8
Hund24199 Selenicereus undatus HOM05D000004 ORTHO05D007707 2.6e-11 72.4 60 53.3
Sopen07g024940 Solanum pennellii HOM05D000736 ORTHO05D016041 2.6e-11 72.4 58 55.2
Rhsim06G0170000 Rhododendron simsii HOM05D000736 ORTHO05D007707 3.4e-11 72.0 58 56.9
SMO203G0198 Selaginella moellendorffii HOM05D000736 ORTHO05D007707 3.4e-11 72.0 78 48.7
HPP92_002526 Vanilla planifolia HOM05D000736 ORTHO05D007707 3.4e-11 72.0 67 47.8
BcaB02g07198 Brassica carinata HOM05D001527 ORTHO05D016041 5.7e-11 71.2 49 67.3
BcaB08g36033 Brassica carinata HOM05D000736 ORTHO05D016041 5.7e-11 71.2 61 59.0
Duzib138G1396 Durio zibethinus HOM05D000736 ORTHO05D007707 7.5e-11 70.9 55 60.0
BcaB07g34061 Brassica carinata HOM05D000736 ORTHO05D016041 1.3e-10 70.1 61 57.4
BcaNung05983 Brassica carinata HOM05D000736 ORTHO05D007707 1.3e-10 70.1 61 59.0
Carub.0003s2617 Capsella rubella HOM05D000736 ORTHO05D007707 1.7e-10 69.7 46 67.4
BcaB06g25883 Brassica carinata HOM05D000736 ORTHO05D016041 8.3e-10 67.4 61 55.7
BcaB05g23169 Brassica carinata HOM05D001355 ORTHO05D016041 1.1e-09 67.0 61 55.7
CBR_g41120 Chara braunii HOM05D000736 ORTHO05D007707 1.4e-09 66.6 49 57.1
BcaB06g25882 Brassica carinata HOM05D000736 ORTHO05D016041 1.8e-09 66.2 65 53.8
Zm00001eb236130 Zea mays HOM05D000736 ORTHO05D007707 1.6e-08 63.2 60 48.3
Cre10.g438050 Chlamydomonas reinhardtii HOM05D000736 ORTHO05D007707 3.5e-08 62.0 41 63.4
Mapoly0191s0005 Marchantia polymorpha HOM05D000736 ORTHO05D007707 1.1e-06 57.0 68 44.1
Pp3c13_3620 Physcomitrium patens HOM05D000736 ORTHO05D007707 3.3e-06 55.5 42 59.5


User provided reference genes

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