Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.4e-175 618.2 309 100.0
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.0e-163 580.1 309 91.6
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.3e-163 578.9 309 91.9
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 4.2e-162 574.7 309 91.3
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 4.1e-157 558.1 309 89.0
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 4.1e-149 531.6 305 84.3
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.1e-145 519.2 309 81.9
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 8.0e-145 517.3 305 82.6
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.8e-144 516.2 309 81.9
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.8e-144 516.2 311 81.4
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 3.1e-144 515.4 305 82.6
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 5.2e-144 514.6 317 80.4
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 5.2e-144 514.6 305 82.6
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 1.7e-142 509.6 309 79.0
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 4.9e-142 508.1 325 78.2
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 3.5e-140 501.9 310 79.4
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.0e-139 500.4 311 79.1
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.3e-139 500.0 310 79.0
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.1e-138 496.9 309 78.3
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.5e-138 496.5 309 77.3
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.6e-137 493.0 310 77.7
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 2.8e-137 492.3 309 76.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.8e-137 492.3 310 78.1
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 2.8e-137 492.3 308 77.3
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 4.7e-137 491.5 310 76.8
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 4.7e-137 491.5 310 76.5
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 6.2e-137 491.1 309 76.4
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 3.1e-136 488.8 310 77.7
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 4.0e-136 488.4 309 76.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 5.2e-136 488.0 313 77.6
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 8.9e-136 487.3 310 76.1
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.2e-135 486.9 308 75.3
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.6e-135 484.2 309 76.4
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.6e-135 484.2 309 76.4
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 4.9e-134 481.5 310 73.9
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 6.4e-134 481.1 310 74.2
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 1.9e-133 479.6 310 73.9
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.4e-133 479.2 310 75.2
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.1e-132 476.1 309 75.4
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.7e-132 475.7 310 73.5
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.6e-132 474.9 308 75.6
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 6.0e-132 474.6 310 72.6
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.3e-131 472.6 310 75.5
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 2.3e-131 472.6 309 74.1
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 1.9e-130 469.5 310 75.5
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 7.3e-130 467.6 307 73.6
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 9.6e-130 467.2 306 74.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 2.1e-129 466.1 306 73.5
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 2.4e-128 462.6 388 64.2
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.4e-128 462.6 306 74.2
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.4e-128 462.6 306 74.2
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.4e-128 462.6 306 73.5
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 4.0e-128 461.8 356 65.7
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.2e-127 460.3 280 80.4
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 1.5e-127 459.9 306 73.2
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 2.0e-127 459.5 306 73.2
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.6e-127 459.1 326 70.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.4e-127 458.8 306 73.5
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.4e-127 458.4 306 73.5
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 4.4e-127 458.4 309 70.6
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.7e-126 456.4 306 72.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 4.9e-126 454.9 310 70.0
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.4e-125 453.4 306 70.6
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 2.4e-125 452.6 306 71.6
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 3.2e-125 452.2 277 77.6
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 7.1e-125 451.1 300 72.7
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.0e-124 448.0 310 72.3
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 6.0e-124 448.0 320 68.8
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 5.1e-123 444.9 310 69.4
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 6.6e-123 444.5 306 71.6
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.1e-122 443.7 306 71.6
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.9e-122 443.0 306 72.2
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 2.5e-122 442.6 305 71.5
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 4.3e-122 441.8 306 71.2
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 7.3e-122 441.0 305 71.1
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 9.6e-122 440.7 329 65.0
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.6e-121 439.9 311 70.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 2.8e-121 439.1 305 69.5
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 3.6e-121 438.7 311 69.5
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.2e-121 438.0 311 68.5
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 6.2e-121 438.0 311 68.5
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 8.1e-121 437.6 306 70.3
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.1e-121 437.6 311 69.1
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.1e-120 437.2 306 70.3
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.4e-120 436.0 310 68.1
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 6.9e-120 434.5 306 68.6
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.2e-119 433.7 311 68.8
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.2e-119 433.7 311 68.8
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 9.9e-119 430.6 306 68.6
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 1.4e-117 426.8 308 64.9
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.6e-116 423.3 312 67.0
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.0e-115 420.6 307 69.4
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 5.1e-115 418.3 340 62.9
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 1.5e-114 416.8 306 65.7
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.5e-114 416.0 301 66.8
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.1e-113 411.0 284 71.8
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 4.5e-111 405.2 244 79.1
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.4e-109 400.2 266 73.7
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 2.4e-109 399.4 297 62.0
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 5.4e-109 398.3 240 80.0
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 3.4e-103 379.0 310 61.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 3.2e-101 372.5 251 70.1
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.2e-100 370.5 241 73.9
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 2.1e-97 359.8 309 60.2
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.7e-94 350.1 306 58.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.5e-90 336.3 209 77.5
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.2e-87 327.4 300 55.3
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 2.0e-87 326.6 296 56.1
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 8.5e-86 321.2 211 73.9
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 2.8e-81 306.2 290 53.4
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.2e-79 300.8 295 52.9
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 5.0e-70 268.9 291 47.1
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.7e-60 236.5 147 75.5
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.8e-58 228.0 145 75.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 4.5e-55 219.2 180 56.1
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.9e-54 216.5 319 42.9
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 3.8e-54 216.1 290 39.7
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.8e-48 197.2 155 60.6
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 2.2e-41 173.7 184 54.9
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.8e-40 170.6 149 60.4
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 3.3e-37 159.8 98 79.6
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 3.3e-37 159.8 149 57.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 8.0e-36 155.2 99 77.8
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.0e-30 136.0 100 65.0
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 3.3e-21 106.7 58 87.9
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.6e-20 104.4 66 71.2
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.8e-18 95.9 103 45.6
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.5e-13 81.3 65 60.0
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.3e-13 80.1 60 63.3
Psat6g049160 Pisum sativum HOM05D006018 ORTHO05D320225 6.2e-12 75.9 37 94.6


User provided reference genes

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