Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 7.2e-226 786.9 406 100.0
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 3.0e-200 701.8 409 88.0
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 3.7e-198 694.9 408 86.5
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 9.4e-194 680.2 407 86.5
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.3e-190 669.8 398 86.7
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 4.2e-186 654.8 383 86.7
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.3e-182 643.3 407 79.6
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 6.3e-182 641.0 407 78.6
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 6.6e-179 630.9 405 80.7
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 6.1e-177 624.4 406 79.8
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.5e-175 619.8 407 77.6
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.4e-175 618.2 405 79.3
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 9.8e-175 617.1 405 79.3
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-174 616.3 405 75.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-174 616.3 405 75.8
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 9.5e-162 573.9 413 71.9
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.2e-161 573.5 414 71.5
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 2.8e-161 572.4 413 72.6
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.7e-158 563.1 413 69.7
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.1e-156 556.2 412 69.2
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.9e-154 549.7 418 67.0
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.3e-154 548.9 413 67.3
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-153 547.0 413 67.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.6e-153 546.6 410 69.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.7e-153 545.0 413 66.8
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.8e-152 543.1 416 67.1
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.6e-151 539.3 413 66.8
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-151 539.3 413 66.8
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 5.8e-151 538.1 411 66.7
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 9.9e-151 537.3 414 67.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.3e-150 537.0 411 67.6
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 2.9e-150 535.8 438 62.6
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.1e-149 533.9 408 68.4
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 4.1e-149 531.9 410 65.4
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.6e-148 530.0 412 66.7
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 3.5e-148 528.9 409 65.5
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.6e-147 524.6 409 65.3
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.5e-146 523.5 413 64.6
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.5e-146 522.7 409 65.0
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.3e-146 521.9 384 68.8
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 7.3e-146 521.2 479 58.2
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 9.6e-146 520.8 413 64.9
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.6e-145 518.8 411 65.5
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 8.1e-145 517.7 410 63.9
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.1e-144 515.8 413 63.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 5.8e-143 511.5 417 64.0
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.9e-142 508.4 387 66.4
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 4.9e-142 508.4 411 63.7
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 6.4e-142 508.1 414 63.3
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.9e-141 506.5 409 61.6
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 4.2e-141 505.4 385 66.2
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.5e-140 502.3 386 66.6
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.0e-140 501.5 418 62.0
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.7e-139 500.0 417 62.4
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.7e-139 500.0 403 62.3
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 6.6e-139 498.0 347 76.1
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 8.7e-139 497.7 409 61.1
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.3e-138 495.4 407 61.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.6e-137 492.3 412 63.6
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.4e-136 490.3 418 60.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 1.4e-136 490.3 413 59.6
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.1e-136 489.2 413 62.2
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 9.9e-135 484.2 416 60.8
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.3e-134 483.8 410 60.0
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.3e-134 483.8 412 60.2
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.4e-133 480.3 407 60.0
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 3.2e-133 479.2 420 62.4
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 4.2e-133 478.8 410 60.5
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.6e-132 476.9 409 60.9
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 7.9e-132 474.6 420 57.9
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 6.2e-129 464.9 414 57.7
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.4e-128 463.8 419 58.2
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.4e-128 463.0 395 58.7
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 5.3e-128 461.8 354 67.8
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 9.9e-127 457.6 415 58.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.2e-126 456.4 344 67.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.6e-124 450.3 396 57.1
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 3.0e-123 446.0 351 65.5
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 3.0e-123 446.0 363 63.4
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 5.1e-123 445.3 401 57.9
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 3.3e-122 442.6 385 57.1
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.6e-121 440.3 414 55.3
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.1e-120 437.6 388 56.7
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.2e-119 434.1 419 56.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 3.2e-117 426.0 413 55.2
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 9.3e-117 424.5 415 55.7
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.2e-116 424.1 347 62.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.7e-116 422.9 413 55.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.7e-116 422.9 401 53.9
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 1.8e-115 420.2 412 55.3
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.8e-115 420.2 412 55.6
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.8e-115 420.2 352 60.8
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 5.1e-115 418.7 359 57.1
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.1e-114 417.5 412 54.1
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 3.3e-114 416.0 378 58.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 9.7e-114 414.5 370 59.5
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.8e-112 410.2 391 54.7
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 3.4e-111 406.0 414 55.1
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 5.0e-110 402.1 414 53.6
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 5.5e-109 398.7 353 58.1
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.1e-108 396.7 427 48.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 4.6e-108 395.6 412 51.9
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.0e-107 394.4 454 46.0
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.8e-107 393.7 467 45.8
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.7e-107 391.7 299 67.2
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.8e-86 322.8 368 44.6
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 5.0e-86 322.4 265 60.0
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.2e-85 319.7 436 40.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.2e-82 311.2 449 38.8
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.5e-77 292.4 311 49.2
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.2e-76 291.2 354 49.7
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 3.0e-75 286.6 223 61.9
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.4e-72 277.7 231 64.9
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.0e-70 269.2 193 67.9
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 6.6e-70 268.9 199 66.3
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.5e-66 257.7 273 51.3
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.2e-63 248.1 182 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.5e-61 240.4 308 42.9
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.1e-56 224.9 159 72.3
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.3e-45 186.4 130 70.0
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.8e-43 181.0 136 70.6
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 4.0e-43 179.9 399 32.1
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.3e-38 164.9 169 53.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-35 154.8 150 54.0
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 3.1e-35 153.7 341 29.9
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.9e-35 152.1 328 31.7
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.6e-34 149.1 116 63.8
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 3.8e-33 146.7 302 36.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.6e-31 141.4 167 50.3
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 3.9e-30 136.7 94 68.1
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 6.0e-23 112.8 81 69.1
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 3.3e-21 107.1 332 28.3
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.1e-15 87.8 119 41.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 9.6e-13 79.0 52 71.2
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 3.7e-12 77.0 95 47.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.2e-10 72.0 81 45.7
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 9.3e-08 62.4 112 37.5
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.8e-06 58.2 156 28.8
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 3.0e-06 57.4 327 22.0
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 8.7e-06 55.8 30 80.0


User provided reference genes

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