Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 6.8e-131 470.7 242 100.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 6.6e-118 427.6 245 86.5
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 2.3e-115 419.1 245 84.5
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.5e-111 405.2 245 81.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 5.8e-106 387.9 253 79.1
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 4.6e-95 351.7 243 71.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 3.0e-94 349.0 245 70.2
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.1e-94 348.2 243 71.2
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 6.6e-94 347.8 243 71.2
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-93 347.1 242 69.8
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.9e-93 346.3 243 70.8
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.9e-93 346.3 242 69.8
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 3.3e-93 345.5 243 69.1
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 9.6e-93 344.0 243 70.4
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 9.6e-93 344.0 246 69.1
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.1e-92 342.8 242 69.8
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.8e-92 342.4 242 69.8
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.8e-92 342.4 243 69.5
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-91 340.1 241 68.9
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.8e-91 339.7 251 66.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 3.1e-91 339.0 225 72.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.1e-91 339.0 242 69.0
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 3.1e-91 339.0 243 67.9
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 5.2e-91 338.2 246 69.9
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 5.2e-91 338.2 243 68.7
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 5.2e-91 338.2 221 72.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 5.2e-91 338.2 246 71.1
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 6.8e-91 337.8 244 67.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.2e-90 337.0 231 70.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.5e-90 336.7 247 68.0
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 2.0e-90 336.3 243 70.0
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.6e-90 335.9 242 69.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.4e-90 335.5 245 67.8
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 7.6e-90 334.3 244 67.2
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 9.9e-90 334.0 252 66.7
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.3e-89 333.6 250 67.6
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.7e-89 333.2 242 67.8
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.7e-89 333.2 254 66.1
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-89 333.2 242 65.7
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.7e-89 333.2 242 66.9
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.2e-89 332.8 242 66.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-89 332.8 242 66.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.2e-89 332.8 242 66.1
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.8e-89 332.0 242 66.1
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.8e-89 332.0 242 65.7
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 3.8e-89 332.0 242 66.1
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.8e-89 332.0 246 65.4
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.8e-89 332.0 248 66.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 4.9e-89 331.6 244 66.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 8.4e-89 330.9 242 68.2
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 8.4e-89 330.9 242 66.9
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.4e-88 330.1 246 66.7
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-88 329.7 242 64.9
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 1.9e-88 329.7 242 70.2
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.9e-88 329.7 245 66.5
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.4e-88 329.3 242 64.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.4e-88 329.3 250 66.8
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.2e-88 328.9 242 64.9
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 3.2e-88 328.9 243 67.9
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.4e-88 328.2 242 65.7
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.1e-88 327.8 243 66.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 9.3e-88 327.4 243 68.3
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 1.6e-87 326.6 250 66.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 2.1e-87 326.2 245 64.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.6e-87 325.1 244 68.0
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 6.0e-87 324.7 250 66.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.0e-86 323.9 242 66.1
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.3e-86 323.6 242 66.1
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.7e-86 323.2 243 65.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.9e-86 322.0 242 64.5
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.1e-86 321.6 248 66.5
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 5.1e-86 321.6 242 65.7
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.5e-85 320.1 230 66.1
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.3e-85 318.5 219 70.3
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-84 316.6 243 64.2
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.2e-84 314.7 242 64.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.8e-83 313.2 249 64.7
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 1.5e-82 310.1 242 62.4
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.9e-81 305.8 243 63.4
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 1.1e-80 303.9 244 62.3
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.7e-79 299.3 254 59.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.0e-78 297.4 246 63.8
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.3e-77 292.4 220 65.5
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 6.2e-76 288.1 219 64.4
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 9.0e-75 284.3 214 62.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 1.2e-74 283.9 249 58.2
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 2.0e-74 283.1 252 55.2
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 5.8e-74 281.6 242 60.3
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.2e-73 279.6 221 59.7
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.2e-71 273.9 215 58.6
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-70 269.2 215 60.9
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.9e-69 266.5 218 58.7
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.6e-69 264.2 218 59.2
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.6e-68 263.5 218 58.3
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.8e-68 262.7 218 57.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.4e-67 260.4 215 58.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.4e-67 259.6 217 55.8
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 3.1e-67 259.2 214 60.3
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 3.1e-67 259.2 251 59.4
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.5e-66 255.4 214 56.1
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 5.8e-66 255.0 214 56.1
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.0e-65 254.2 195 63.6
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 1.7e-65 253.4 214 55.6
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.7e-65 253.4 214 57.0
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-65 251.9 214 56.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.9e-65 251.9 214 56.1
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.4e-65 251.1 214 56.1
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.5e-64 249.6 218 54.6
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.5e-64 249.6 214 54.7
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.2e-63 247.3 219 53.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.6e-63 246.9 214 54.7
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.7e-63 246.1 214 53.3
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.5e-63 245.7 219 53.4
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 6.0e-63 245.0 216 53.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 7.9e-63 244.6 215 54.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.3e-62 243.8 217 53.0
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-62 243.4 218 54.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.3e-62 243.0 219 53.0
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 5.7e-61 238.4 195 61.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-60 235.7 214 53.3
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.7e-60 235.7 214 53.3
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 4.1e-59 232.3 214 52.3
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 4.1e-59 232.3 214 52.3
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 5.3e-59 231.9 138 81.2
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.4e-58 229.2 186 59.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.3e-57 227.3 213 51.6
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.9e-54 215.7 189 56.1
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.7e-54 214.9 216 51.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.5e-53 213.8 179 56.4
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.5e-53 213.8 130 78.5
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.5e-53 213.8 210 51.9
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.5e-53 213.0 213 49.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 7.4e-53 211.5 214 51.4
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.4e-51 206.5 195 53.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-48 196.8 216 47.7
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 5.5e-48 195.3 125 73.6
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 9.4e-48 194.5 218 46.3
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 9.4e-48 194.5 218 46.8
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.9e-47 191.4 166 53.6
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.7e-42 174.9 140 62.1
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.1e-40 171.0 185 48.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 2.5e-40 169.9 123 62.6
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 2.0e-37 160.2 357 32.2
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.6e-37 159.8 229 41.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-36 156.8 222 41.0
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.8e-36 156.4 202 48.0
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.0e-33 147.9 118 56.8
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.8e-30 137.1 209 38.3
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 4.0e-30 136.0 121 57.0
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 6.7e-30 135.2 185 42.7
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.1e-27 126.3 106 53.8
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-24 117.1 122 50.8
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-23 114.4 109 50.5
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 2.7e-23 113.2 243 30.5
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 3.7e-20 102.8 176 37.5
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.1e-19 101.3 86 58.1
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-19 100.9 65 73.8
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.9e-16 90.5 171 35.1
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.7e-15 86.7 90 50.0
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 2.7e-15 86.7 66 59.1
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 4.7e-15 85.9 153 37.3
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-13 79.3 61 65.6
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 1.7e-12 77.4 82 51.2
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 2.8e-12 76.6 72 52.8
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.0e-09 68.2 48 64.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 6.6e-09 65.5 69 49.3
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 6.6e-09 65.5 75 45.3
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 8.0e-07 58.5 62 48.4
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 8.9e-06 55.1 51 54.9


User provided reference genes

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