Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 4.3e-49 197.6 95 100.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 8.8e-34 146.7 94 77.7
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 5.2e-26 120.9 93 64.5
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 5.7e-25 117.5 100 63.0
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 9.7e-25 116.7 90 66.7
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.7e-24 115.9 94 70.2
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 5.3e-23 110.9 100 60.0
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 3.8e-21 104.8 101 54.5
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 4.7e-19 97.8 100 53.0
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 1.0e-18 96.7 103 54.4
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 9.8e-17 90.1 104 51.0
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.1e-15 86.7 103 53.4
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 5.0e-13 77.8 84 45.2
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 8.6e-13 77.0 90 44.4
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.5e-12 76.3 96 43.8
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.2e-12 75.1 86 43.0
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.2e-12 73.9 86 41.9
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.2e-12 73.9 86 41.9
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 9.5e-12 73.6 77 48.1
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.2e-11 73.2 80 47.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.2e-11 73.2 94 43.6
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.6e-11 71.6 79 46.8
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.6e-11 71.6 79 46.8
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.7e-11 71.2 85 41.2
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.0e-10 70.1 76 47.4
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.8e-10 69.3 90 43.3
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 2.3e-10 68.9 55 52.7
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 5.2e-10 67.8 78 44.9
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 5.2e-10 67.8 76 44.7
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 8.8e-10 67.0 84 46.4
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.5e-09 66.2 84 46.4
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.0e-09 65.9 78 43.6
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.6e-09 65.5 56 53.6
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 3.4e-09 65.1 57 49.1
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 3.4e-09 65.1 85 42.4
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.4e-09 64.7 95 38.9
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 4.4e-09 64.7 79 43.0
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 5.7e-09 64.3 79 43.0
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 5.7e-09 64.3 86 44.2
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 5.7e-09 64.3 77 40.3
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 7.5e-09 63.9 81 42.0
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 9.8e-09 63.5 63 50.8
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 1.7e-08 62.8 79 41.8
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.7e-08 62.8 87 40.2
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.7e-08 62.8 87 40.2
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.7e-08 62.8 65 49.2
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.2e-08 62.4 87 37.9
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 2.2e-08 62.4 56 53.6
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 2.8e-08 62.0 87 37.9
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 2.8e-08 62.0 86 39.5
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.7e-08 61.6 81 43.2
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.9e-08 61.2 56 51.8
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 4.9e-08 61.2 81 43.2
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.9e-08 61.2 81 43.2
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 6.3e-08 60.8 68 45.6
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.3e-08 60.8 81 39.5
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 8.3e-08 60.5 97 45.4
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 8.3e-08 60.5 73 38.4
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-07 60.1 56 50.0
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-07 60.1 88 36.4
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.1e-07 60.1 72 40.3
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.1e-07 60.1 79 46.8
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.1e-07 60.1 81 43.2
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.1e-07 60.1 79 45.6
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.4e-07 59.7 54 51.9
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.4e-07 59.7 58 48.3
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 1.8e-07 59.3 87 39.1
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 1.8e-07 59.3 77 42.9
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 1.8e-07 59.3 73 37.0
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 2.4e-07 58.9 60 48.3
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.4e-07 58.9 61 45.9
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 2.4e-07 58.9 93 37.6
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.4e-07 58.9 88 37.5
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.4e-07 58.9 101 32.7
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 3.1e-07 58.5 105 37.1
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 3.1e-07 58.5 55 49.1
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 3.1e-07 58.5 56 48.2
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 3.1e-07 58.5 75 41.3
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 4.1e-07 58.2 89 37.1
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 4.1e-07 58.2 78 43.6
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.1e-07 58.2 57 49.1
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 4.1e-07 58.2 70 45.7
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.4e-07 57.8 62 48.4
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 5.4e-07 57.8 88 36.4
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.4e-07 57.8 61 42.6
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.4e-07 57.8 99 33.3
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 5.4e-07 57.8 99 33.3
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 5.4e-07 57.8 105 35.2
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 7.0e-07 57.4 70 40.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.0e-07 57.4 53 47.2
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 7.0e-07 57.4 57 47.4
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.0e-07 57.4 84 40.5
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 7.0e-07 57.4 110 37.3
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 9.2e-07 57.0 65 44.6
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 9.2e-07 57.0 54 48.1
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 9.2e-07 57.0 68 47.1
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 9.2e-07 57.0 97 44.3
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 1.6e-06 56.2 87 44.8
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.6e-06 56.2 87 44.8
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.6e-06 56.2 88 43.2
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.0e-06 55.8 79 40.5
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.0e-06 55.8 64 43.8
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.0e-06 55.8 64 43.8
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.0e-06 55.8 91 39.6
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.0e-06 55.8 84 39.3
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 2.7e-06 55.5 80 37.5
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.5e-06 55.1 64 43.8
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.5e-06 55.1 107 32.7
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 4.5e-06 54.7 89 42.7
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.5e-06 54.7 58 48.3
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.5e-06 54.7 58 48.3
Lsat_1_v5_gn_7_40601 Lactuca sativa HOM05D003277 ORTHO05D003275 4.5e-06 54.7 78 41.0
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 5.9e-06 54.3 74 41.9
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 5.9e-06 54.3 54 44.4
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 5.9e-06 54.3 62 43.5
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 7.8e-06 53.9 98 37.8
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 7.8e-06 53.9 54 44.4
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 7.8e-06 53.9 75 42.7
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 7.8e-06 53.9 60 45.0


User provided reference genes

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