Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 7.0e-81 303.9 155 100.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.7e-63 246.1 201 67.7
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.5e-62 242.3 201 65.2
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 4.3e-62 241.5 201 66.2
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.0e-59 232.6 239 59.4
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.0e-55 220.3 201 61.7
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.0e-55 220.3 201 62.7
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 6.6e-55 217.6 201 60.7
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 6.6e-55 217.6 194 62.9
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.6e-55 217.6 201 60.2
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 8.6e-55 217.2 196 63.3
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.1e-54 216.9 195 61.0
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.1e-54 216.9 201 59.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.5e-54 216.5 201 60.7
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.5e-54 216.5 201 59.2
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.5e-54 215.7 191 61.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.5e-54 215.7 201 60.2
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.3e-54 215.3 201 59.7
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 5.6e-54 214.5 201 60.2
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 5.6e-54 214.5 201 59.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 7.3e-54 214.2 196 62.2
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.2e-53 213.4 194 61.3
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.2e-53 213.4 201 58.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.6e-53 213.0 194 61.3
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.6e-53 213.0 201 59.2
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.1e-53 212.6 201 58.7
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.8e-53 212.2 199 59.8
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.6e-53 211.8 201 58.2
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 4.7e-53 211.5 196 61.2
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 4.7e-53 211.5 201 58.7
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 6.2e-53 211.1 196 60.2
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 6.2e-53 211.1 199 59.3
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.2e-53 211.1 194 60.8
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.1e-53 210.7 194 59.8
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.1e-52 210.3 201 58.7
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.1e-52 210.3 194 60.8
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-52 209.9 199 59.3
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.4e-52 209.9 201 59.2
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.8e-52 209.5 196 61.2
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.8e-52 209.5 201 58.2
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 2.4e-52 209.1 201 59.2
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.4e-52 209.1 201 58.7
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 3.1e-52 208.8 201 58.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.1e-52 208.8 194 60.3
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.0e-52 208.4 201 57.2
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.2e-52 208.0 199 58.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 5.2e-52 208.0 202 58.9
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.2e-52 208.0 196 59.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 5.2e-52 208.0 198 59.1
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 6.8e-52 207.6 189 61.4
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 8.9e-52 207.2 203 58.1
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 8.9e-52 207.2 201 58.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.2e-51 206.8 201 55.7
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-51 206.8 202 58.4
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.2e-51 206.8 201 58.2
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.2e-51 206.8 205 58.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.2e-51 206.8 201 55.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-51 206.5 189 61.4
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-51 206.5 202 58.4
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.5e-51 206.5 201 57.2
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.0e-51 206.1 201 58.7
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.0e-51 206.1 201 58.7
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.0e-51 206.1 201 58.7
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 2.0e-51 206.1 193 59.6
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.0e-51 206.1 203 57.6
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.0e-51 206.1 201 57.2
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.6e-51 205.7 201 58.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.6e-51 205.7 194 60.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.6e-51 205.7 194 60.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 3.4e-51 205.3 201 58.7
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.4e-51 205.3 194 59.3
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.4e-51 205.3 201 57.7
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 5.8e-51 204.5 201 58.2
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 5.8e-51 204.5 195 59.5
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 5.8e-51 204.5 193 60.1
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.8e-51 204.5 194 59.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 7.6e-51 204.1 194 58.2
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.6e-51 204.1 198 57.6
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 7.6e-51 204.1 195 60.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 9.9e-51 203.8 190 59.5
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.9e-51 203.8 201 56.7
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 1.3e-50 203.4 201 56.7
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.3e-50 203.4 201 55.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.3e-50 203.4 194 58.8
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.3e-50 203.4 193 60.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.7e-50 203.0 201 57.2
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 2.2e-50 202.6 196 57.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.2e-50 202.6 200 59.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.9e-50 202.2 189 59.3
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.9e-50 202.2 194 55.7
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.8e-50 201.8 201 57.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 3.8e-50 201.8 201 56.7
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 6.4e-50 201.1 194 58.8
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 6.4e-50 201.1 188 60.1
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 8.4e-50 200.7 199 57.3
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.4e-49 199.9 191 58.6
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.4e-49 199.1 192 57.3
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.2e-49 198.7 207 55.1
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.2e-49 198.7 189 56.6
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.2e-49 198.4 166 66.3
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 4.2e-49 198.4 201 56.2
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 4.2e-49 198.4 193 57.0
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 5.4e-49 198.0 193 57.5
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.4e-49 198.0 201 55.7
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 9.2e-49 197.2 195 57.4
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 1.2e-48 196.8 202 56.4
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.2e-48 196.8 181 60.8
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.1e-48 196.1 198 55.6
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.5e-48 195.3 201 54.7
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 6.0e-48 194.5 180 60.0
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 6.0e-48 194.5 191 57.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 1.0e-47 193.7 190 57.4
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 1.7e-47 193.0 224 52.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.3e-47 192.6 195 56.9
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.3e-46 188.3 183 55.7
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.8e-45 185.7 186 57.5
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.1e-44 183.7 201 54.7
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.0e-44 181.8 179 57.0
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.0e-43 179.5 202 53.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 7.6e-43 177.6 202 53.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 5.4e-41 171.4 188 50.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 9.3e-41 170.6 157 60.5
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.1e-40 169.5 104 79.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.5e-38 163.3 188 49.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 2.1e-37 159.5 197 49.2
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.6e-37 158.7 96 79.2
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 6.2e-37 157.9 188 49.5
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.4e-35 152.1 94 78.7
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 3.4e-35 152.1 104 72.1
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.3e-34 150.2 190 50.5
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 2.9e-34 149.1 94 76.6
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.1e-33 147.1 211 39.8
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 2.5e-30 136.0 134 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.3e-29 133.7 184 46.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.4e-28 129.4 186 41.4
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 4.0e-28 128.6 75 76.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 7.6e-27 124.4 146 51.4
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 4.9e-26 121.7 151 50.3
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.6e-19 97.8 84 61.9
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.2e-18 96.3 59 76.3
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.7e-16 89.4 131 42.0
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-15 87.4 51 80.4
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 2.5e-14 82.8 64 71.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.3e-12 75.1 86 54.7
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 6.9e-12 74.7 113 42.5
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.0e-10 70.9 48 68.8
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.4e-09 67.0 51 66.7
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.9e-09 66.6 96 47.9
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.7e-07 58.2 75 42.7
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 6.7e-07 58.2 63 49.2


User provided reference genes

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