Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 7.4e-65 250.4 124 100.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 4.8e-40 167.9 123 72.4
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 7.9e-35 150.6 124 66.1
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.0e-26 123.6 125 59.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.0e-26 123.6 125 59.2
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.4e-26 123.2 92 67.4
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 8.8e-26 120.6 101 66.3
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 7.2e-20 100.9 125 52.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.8e-18 96.3 126 50.8
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.8e-18 94.0 128 48.4
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-17 93.6 128 50.0
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 4.8e-16 88.2 121 46.3
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.8e-16 88.2 121 47.9
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 5.4e-15 84.7 124 47.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.7e-14 82.4 116 42.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.5e-14 81.6 122 42.6
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.9e-14 81.3 111 43.2
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.0e-13 80.5 120 40.0
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.2e-13 79.3 119 45.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.2e-13 79.3 111 44.1
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 5.0e-13 78.2 121 43.0
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-12 77.0 118 39.8
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.5e-12 76.6 111 43.2
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-12 76.6 111 45.0
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.5e-12 75.9 121 40.5
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 2.5e-12 75.9 117 43.6
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 4.2e-12 75.1 118 38.1
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 4.2e-12 75.1 116 42.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 5.5e-12 74.7 118 37.3
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 7.2e-12 74.3 119 43.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 9.4e-12 73.9 79 50.6
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 1.2e-11 73.6 122 44.3
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.6e-11 73.2 120 48.3
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.1e-11 72.8 111 39.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.1e-11 72.8 103 44.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.7e-11 72.4 121 41.3
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.7e-11 72.4 111 42.3
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.6e-11 72.0 111 44.1
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.7e-11 71.6 77 49.4
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.1e-11 71.2 111 42.3
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 6.1e-11 71.2 119 41.2
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 8.0e-11 70.9 71 54.9
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.0e-11 70.9 115 40.9
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.0e-10 70.5 111 39.6
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.4e-10 70.1 110 40.0
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.4e-10 70.1 117 41.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.4e-10 70.1 121 38.8
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.8e-10 69.7 101 43.6
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.3e-10 69.3 95 43.2
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.0e-10 68.9 115 39.1
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-10 68.9 115 41.7
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.0e-10 68.6 98 45.9
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.0e-10 68.6 110 40.0
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 5.2e-10 68.2 116 37.9
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.8e-10 67.8 90 46.7
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 6.8e-10 67.8 113 42.5
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.8e-10 67.4 111 36.9
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 111 38.7
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.2e-09 67.0 111 38.7
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-09 67.0 64 54.7
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.5e-09 66.6 125 36.8
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.5e-09 66.6 69 55.1
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 3.4e-09 65.5 120 37.5
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.4e-09 65.1 118 39.0
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 4.4e-09 65.1 116 39.7
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.4e-09 65.1 120 38.3
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.7e-09 64.7 111 39.6
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 5.7e-09 64.7 109 35.8
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 7.5e-09 64.3 68 50.0
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 7.5e-09 64.3 118 36.4
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.8e-09 63.9 115 40.0
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-08 63.5 101 42.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.3e-08 63.5 82 40.2
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.7e-08 63.2 70 50.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 3.7e-08 62.0 61 47.5
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.7e-08 62.0 111 39.6
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.7e-08 62.0 89 43.8
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.7e-08 62.0 128 35.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.9e-08 61.6 72 47.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.9e-08 61.6 115 41.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.3e-08 60.8 74 44.6
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 8.3e-08 60.8 109 33.9
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.8e-07 59.7 122 39.3
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.4e-07 59.3 57 47.4
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.4e-07 59.3 61 47.5
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.4e-07 59.3 49 46.9
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.4e-07 59.3 123 38.2
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.1e-07 58.9 73 43.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.1e-07 58.5 112 40.2
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.1e-07 58.5 112 41.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 4.1e-07 58.5 81 43.2
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 5.4e-07 58.2 50 58.0
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 5.4e-07 58.2 109 41.3
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.4e-07 58.2 65 41.5
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.0e-07 57.8 65 47.7
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 7.0e-07 57.8 144 33.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 7.0e-07 57.8 121 38.0
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 9.2e-07 57.4 45 53.3
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 9.2e-07 57.4 71 39.4
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 9.2e-07 57.4 84 38.1
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 9.2e-07 57.4 112 33.0
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.2e-06 57.0 122 33.6
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.2e-06 57.0 38 60.5
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 1.6e-06 56.6 62 45.2
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.6e-06 56.6 64 48.4
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.0e-06 56.2 40 57.5
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-06 56.2 46 56.5
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.0e-06 56.2 112 40.2
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-06 56.2 113 32.7
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.0e-06 56.2 113 32.7
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.7e-06 55.8 113 37.2
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-06 55.8 113 37.2
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-06 55.8 113 37.2
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 3.5e-06 55.5 40 62.5
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 3.5e-06 55.5 75 38.7
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 3.5e-06 55.5 47 55.3
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 3.5e-06 55.5 40 62.5
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 3.5e-06 55.5 75 38.7
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.5e-06 55.5 113 37.2
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.5e-06 55.5 118 33.1
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.5e-06 55.1 67 44.8
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 4.5e-06 55.1 50 50.0
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 4.5e-06 55.1 81 42.0
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.5e-06 55.1 78 42.3
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 5.9e-06 54.7 40 60.0
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 5.9e-06 54.7 112 39.3
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.9e-06 54.7 77 39.0
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 7.7e-06 54.3 41 61.0
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 7.7e-06 54.3 61 50.8
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 7.7e-06 54.3 61 50.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 7.7e-06 54.3 52 51.9
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 7.7e-06 54.3 72 41.7


User provided reference genes

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