Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g303600 Pisum sativum HOM05D002328 ORTHO05D002433 5.0e-129 464.5 251 100.0
TPR.G33136 Trifolium pratense HOM05D002328 ORTHO05D008812 5.5e-51 205.3 285 49.1
Medtr8g006760 Medicago truncatula HOM05D002328 ORTHO05D002433 2.2e-47 193.4 174 60.3
Ca_14059_v3 Cicer arietinum L. HOM05D002328 ORTHO05D002433 4.8e-47 192.2 259 49.0
Lj3g0001565 Lotus japonicus HOM05D002328 ORTHO05D002433 1.4e-38 164.1 231 46.8
Lj1g0009163 Lotus japonicus HOM05D002328 ORTHO05D002433 6.8e-33 145.2 260 40.8
Glyma.07G112900 Glycine max HOM05D002328 ORTHO05D002433 9.8e-32 141.4 267 42.3
Lalb_Chr19g0126551 Lupinus albus HOM05D002328 ORTHO05D002433 1.4e-30 137.5 272 40.1
Lalb_Chr07g0195491 Lupinus albus HOM05D002328 ORTHO05D002433 4.5e-29 132.5 138 53.6
Lalb_Chr13g0290551 Lupinus albus HOM05D002328 ORTHO05D002433 2.5e-27 126.7 236 40.3
arahy.Tifrunner.gnm1.ann1.724KQE Arachis hypogaea HOM05D002328 ORTHO05D002433 2.7e-26 123.2 233 39.9
arahy.Tifrunner.gnm1.ann1.EQ3HVT Arachis hypogaea HOM05D002328 ORTHO05D002433 4.0e-25 119.4 236 38.6
Glyma.18G253000 Glycine max HOM05D002328 ORTHO05D002433 2.0e-24 117.1 291 36.1
arahy.Tifrunner.gnm1.ann1.NW4DRM Arachis hypogaea HOM05D002328 ORTHO05D002433 1.8e-22 110.5 170 39.4
arahy.Tifrunner.gnm1.ann1.Q1GHIM Arachis hypogaea HOM05D002328 ORTHO05D002433 1.8e-22 110.5 170 39.4
Glyma.03G113800 Glycine max HOM05D002328 ORTHO05D002433 3.1e-22 109.8 98 56.1
Phvul.008G045900 Phaseolus vulgaris HOM05D002328 ORTHO05D002433 3.3e-19 99.8 260 33.1
VMungo1383G1846 Vigna mungo HOM05D002328 ORTHO05D002433 2.1e-18 97.1 261 33.3
Psat3g194640 Pisum sativum HOM05D002328 ORTHO05D002433 6.8e-17 92.0 235 34.5
Haze_02818 Corylus avellana HOM05D002328 ORTHO05D002433 2.0e-16 90.5 133 43.6
Cfa011084 Carpinus fangiana HOM05D002328 ORTHO05D002433 3.4e-16 89.7 236 33.5
Ciclev10011548m.g Citrus clementina HOM05D002328 ORTHO05D002433 4.4e-16 89.4 160 43.1
Atru.chr3.217 Acer truncatum HOM05D002328 ORTHO05D002433 9.8e-16 88.2 127 43.3
Potri.007G051100 Populus trichocarpa HOM05D002328 ORTHO05D002433 1.7e-15 87.4 184 38.0
TWI73G0027 Tripterygium wilfordii HOM05D002328 ORTHO05D002433 2.9e-15 86.7 140 38.6
Atru.chr11.1691 Acer truncatum HOM05D002328 ORTHO05D002433 4.9e-15 85.9 224 33.9
QL04p030673 Quercus lobata HOM05D002328 ORTHO05D002433 1.1e-14 84.7 144 40.3
Ca_04039_v3 Cicer arietinum L. HOM05D002328 ORTHO05D002433 1.4e-14 84.3 120 46.7
Ciclev10027327m.g Citrus clementina HOM05D002328 ORTHO05D002433 1.4e-14 84.3 131 39.7
Atru.chr3.228 Acer truncatum HOM05D002328 ORTHO05D002433 1.8e-14 84.0 126 40.5
Manes.12G109700 Manihot esculenta HOM05D002328 ORTHO05D002433 3.2e-14 83.2 228 30.3
Prupe.2G128100 Prunus persica HOM05D002328 ORTHO05D002433 4.1e-14 82.8 141 39.0
TAR633G2789 Trochodendron aralioides HOM05D002328 ORTHO05D002433 3.5e-13 79.7 140 36.4
Nn7g36180 Nelumbo nucifera HOM05D002328 ORTHO05D002433 4.6e-13 79.3 141 37.6
Dinv43629 Davidia involucrata HOM05D002328 ORTHO05D002433 1.0e-12 78.2 243 32.9
GSVIVG01018258001 Vitis vinifera HOM05D002328 ORTHO05D002433 1.3e-12 77.8 254 31.1
Thecc.01G066900 Theobroma cacao HOM05D002328 ORTHO05D002433 2.3e-12 77.0 128 39.8
Thecc.05G224300 Theobroma cacao HOM05D002328 ORTHO05D002433 3.0e-12 76.6 186 30.6
TPR.G12265 Trifolium pratense HOM05D002328 ORTHO05D002433 3.0e-12 76.6 236 34.7
CiPaw.13G027500 Carya illinoinensis HOM05D002328 ORTHO05D002433 3.9e-12 76.3 283 32.9
Dinv33207 Davidia involucrata HOM05D002328 ORTHO05D002433 5.0e-12 75.9 149 34.9
Gohir.D08G240300 Gossypium hirsutum HOM05D002328 ORTHO05D002433 8.6e-12 75.1 130 37.7
MD04G1049200 Malus domestica HOM05D002328 ORTHO05D002433 8.6e-12 75.1 147 34.0
TWI09G0490 Tripterygium wilfordii HOM05D002328 ORTHO05D002433 8.6e-12 75.1 140 33.6
Duzib128G0596 Durio zibethinus HOM05D002328 ORTHO05D002433 1.1e-11 74.7 147 38.8
Gorai.003G028200 Gossypium raimondii HOM05D002328 ORTHO05D002433 1.1e-11 74.7 130 36.2
Ciclev10019728m.g Citrus clementina HOM05D002328 ORTHO05D002433 1.5e-11 74.3 141 35.5
Duzib177G0369 Durio zibethinus HOM05D002328 ORTHO05D002433 1.5e-11 74.3 203 32.5
Gohir.A02G153800 Gossypium hirsutum HOM05D002328 ORTHO05D002433 1.9e-11 73.9 131 37.4
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 1.9e-11 73.9 147 36.7
PGR004G0824 Punica granatum HOM05D002328 ORTHO05D002433 2.5e-11 73.6 269 28.3
Gohir.A08G221642 Gossypium hirsutum HOM05D002328 ORTHO05D002433 4.3e-11 72.8 130 36.9
Gohir.D03G026500 Gossypium hirsutum HOM05D002328 ORTHO05D002433 4.3e-11 72.8 172 32.0
Gorai.004G255600 Gossypium raimondii HOM05D002328 ORTHO05D002433 4.3e-11 72.8 130 36.9
MD07G1104500 Malus domestica HOM05D002328 ORTHO05D002433 4.3e-11 72.8 133 37.6
Actinidia12647 Actinidia chinensis HOM05D002328 ORTHO05D002433 5.6e-11 72.4 151 35.1
MELO3C005981.2 Cucumis melo HOM05D002328 ORTHO05D002433 7.3e-11 72.0 232 29.7
FvH4_7g09930 Fragaria vesca HOM05D002328 ORTHO05D002433 7.3e-11 72.0 114 41.2
FAN06G3230 Fragaria x ananassa HOM05D002328 ORTHO05D002433 7.3e-11 72.0 114 41.2
FAN06G4808 Fragaria x ananassa HOM05D002328 ORTHO05D002433 7.3e-11 72.0 114 41.2
Potri.005G144800 Populus trichocarpa HOM05D002328 ORTHO05D002433 9.5e-11 71.6 233 29.6
COL.COLO4_11516 Corchorus olitorius HOM05D002328 ORTHO05D002433 1.2e-10 71.2 148 35.8
Nn7g36814 Nelumbo nucifera HOM05D002328 ORTHO05D002433 1.6e-10 70.9 287 27.2
Duzib187G0840 Durio zibethinus HOM05D002328 ORTHO05D002433 2.1e-10 70.5 112 39.3
Rhsim01G0139500 Rhododendron simsii HOM05D002328 ORTHO05D002433 2.1e-10 70.5 138 34.8
ClCG05G000430 Citrullus lanatus HOM05D002328 ORTHO05D002433 2.8e-10 70.1 258 29.8
Eucgr.E01573 Eucalyptus grandis HOM05D002328 ORTHO05D002433 2.8e-10 70.1 135 37.8
FAN01G1068 Fragaria x ananassa HOM05D002328 ORTHO05D002433 4.7e-10 69.3 114 40.4
CANSAT21G0943 Cannabis sativa HOM05D002328 ORTHO05D002433 8.0e-10 68.6 243 29.2
FAN10G1746 Fragaria x ananassa HOM05D002328 ORTHO05D002433 8.0e-10 68.6 114 39.5
FAN10G2350 Fragaria x ananassa HOM05D002328 ORTHO05D002433 8.0e-10 68.6 114 39.5
Cpa.g.sc9.369 Carica papaya HOM05D002328 ORTHO05D002433 1.0e-09 68.2 126 36.5
MELO3C017769.2 Cucumis melo HOM05D002328 ORTHO05D002433 1.0e-09 68.2 140 32.9
Prupe.1G207400 Prunus persica HOM05D002328 ORTHO05D002433 1.0e-09 68.2 142 32.4
Aa31LG6G14290 Aethionema arabicum HOM05D002328 ORTHO05D002433 1.4e-09 67.8 146 35.6
Aqoxy1G00245 Aquilegia oxysepala HOM05D002328 ORTHO05D002433 1.4e-09 67.8 210 28.6
Sed0000664 Sechium edule HOM05D002328 ORTHO05D002433 1.4e-09 67.8 211 29.4
TPR.G26206 Trifolium pratense HOM05D002328 ORTHO05D002433 1.4e-09 67.8 110 44.5
CsaV3_3G007600 Cucumis sativus L. HOM05D002328 ORTHO05D002433 1.8e-09 67.4 157 34.4
Oeu063228.1 Olea europaea HOM05D002328 ORTHO05D002433 1.8e-09 67.4 141 35.5
QL10p055924 Quercus lobata HOM05D002328 ORTHO05D002433 1.8e-09 67.4 149 33.6
RcHm_v2.0_Chr1g0347491 Rosa chinensis HOM05D002328 ORTHO05D002433 1.8e-09 67.4 258 28.7
Sed0014065 Sechium edule HOM05D002328 ORTHO05D002433 2.3e-09 67.0 140 32.9
Atru.chr4.1423 Acer truncatum HOM05D002328 ORTHO05D002433 3.1e-09 66.6 163 33.1
Sabra05G0115600 Salix brachista HOM05D002328 ORTHO05D002433 3.1e-09 66.6 133 39.1
PGR042G1105 Punica granatum HOM05D002328 ORTHO05D002433 5.2e-09 65.9 117 34.2
CANSAT56G1496 Cannabis sativa HOM05D002328 ORTHO05D002433 6.8e-09 65.5 142 34.5
CsaV3_4G002710 Cucumis sativus L. HOM05D002328 ORTHO05D002433 6.8e-09 65.5 139 34.5
PSO339G2753 Papaver somniferum HOM05D002328 ORTHO05D002433 8.9e-09 65.1 124 35.5
PSO384G5057 Papaver somniferum HOM05D002328 ORTHO05D002433 8.9e-09 65.1 124 35.5
GSVIVG01038145001 Vitis vinifera HOM05D002328 ORTHO05D002433 8.9e-09 65.1 149 30.9
CSS0046222 Camellia sinensis var. sinensis HOM05D002328 ORTHO05D002433 1.2e-08 64.7 147 34.0
Eucgr.L00004 Eucalyptus grandis HOM05D002328 ORTHO05D002433 1.5e-08 64.3 149 32.9
Gohir.D10G123000 Gossypium hirsutum HOM05D002328 ORTHO05D002433 1.5e-08 64.3 149 30.2
Gorai.011G135500 Gossypium raimondii HOM05D002328 ORTHO05D002433 1.5e-08 64.3 149 30.2
Medtr7g007590 Medicago truncatula HOM05D002328 ORTHO05D002433 1.5e-08 64.3 218 28.9
Peaxi162Scf00011g00238 Petunia axillaris HOM05D002328 ORTHO05D002433 1.5e-08 64.3 141 34.8
RcHm_v2.0_Chr7g0224241 Rosa chinensis HOM05D002328 ORTHO05D002433 1.5e-08 64.3 171 29.2
Haze_01357 Corylus avellana HOM05D002328 ORTHO05D002433 2.0e-08 63.9 149 30.2
Gohir.A10G144000 Gossypium hirsutum HOM05D002328 ORTHO05D002433 2.0e-08 63.9 149 30.2
Gohir.A11G218400 Gossypium hirsutum HOM05D002328 ORTHO05D002433 2.0e-08 63.9 148 33.1
AUR62002399 Chenopodium quinoa HOM05D002328 ORTHO05D002433 2.6e-08 63.5 158 31.0
FvH4_5g30050 Fragaria vesca HOM05D002328 ORTHO05D002433 2.6e-08 63.5 170 29.4
FAN03G2646 Fragaria x ananassa HOM05D002328 ORTHO05D002433 2.6e-08 63.5 258 28.3
FAN13G1531 Fragaria x ananassa HOM05D002328 ORTHO05D002433 2.6e-08 63.5 170 29.4
AL7G13360 Arabidopsis lyrata HOM05D002328 ORTHO05D002433 3.4e-08 63.2 116 39.7
AT3G59670 Arabidopsis thaliana HOM05D002328 ORTHO05D002433 3.4e-08 63.2 119 37.0
AUR62023419 Chenopodium quinoa HOM05D002328 ORTHO05D002433 3.4e-08 63.2 268 30.2
Nn7g36818 Nelumbo nucifera HOM05D002328 ORTHO05D002433 3.4e-08 63.2 284 26.8
Sabra13G0106100 Salix brachista HOM05D002328 ORTHO05D002433 3.4e-08 63.2 166 28.9
Duzib264G0444 Durio zibethinus HOM05D002328 ORTHO05D002433 4.4e-08 62.8 268 28.0
Manes.04G035100 Manihot esculenta HOM05D002328 ORTHO05D002433 4.4e-08 62.8 141 29.8
Nitab4.5_0002245g0140 Nicotiana tabacum HOM05D002328 ORTHO05D002433 4.4e-08 62.8 128 36.7
Gohir.D11G205200 Gossypium hirsutum HOM05D002328 ORTHO05D002433 5.8e-08 62.4 148 31.8
Gorai.007G220100 Gossypium raimondii HOM05D002328 ORTHO05D002433 5.8e-08 62.4 148 31.8
unitig_26.g8867 Utricularia gibba HOM05D002328 ORTHO05D002433 7.5e-08 62.0 123 36.6
Cfa015270 Carpinus fangiana HOM05D002328 ORTHO05D002433 9.8e-08 61.6 148 29.7
COL.COLO4_04394 Corchorus olitorius HOM05D002328 ORTHO05D002433 9.8e-08 61.6 165 28.5
Carub.0007s0285 Capsella rubella HOM05D002328 ORTHO05D002433 1.3e-07 61.2 130 34.6
Cc02_g25000 Coffea canephora HOM05D002328 ORTHO05D002433 1.3e-07 61.2 111 37.8
Thhalv10005896m.g Eutrema salsugineum HOM05D002328 ORTHO05D002433 2.2e-07 60.5 121 36.4
FAN04G0476 Fragaria x ananassa HOM05D002328 ORTHO05D002433 2.2e-07 60.5 170 29.4
Potri.013G127100 Populus trichocarpa HOM05D002328 ORTHO05D002433 2.2e-07 60.5 156 29.5
Rhsim09G0009700 Rhododendron simsii HOM05D002328 ORTHO05D002433 2.2e-07 60.5 172 30.8
Hund17083 Selenicereus undatus HOM05D002328 ORTHO05D002433 2.2e-07 60.5 126 34.9
Sopen01g046790 Solanum pennellii HOM05D002328 ORTHO05D002433 2.2e-07 60.5 118 37.3
AT4G37440 Arabidopsis thaliana HOM05D002328 ORTHO05D002433 2.9e-07 60.1 123 38.2
CAN.G1577.3 Capsicum annuum HOM05D002328 ORTHO05D002433 2.9e-07 60.1 122 37.7
CiPaw.01G170300 Carya illinoinensis HOM05D002328 ORTHO05D002433 2.9e-07 60.1 160 30.6
Sc23g0005100 Simmondsia chinensis HOM05D002328 ORTHO05D002433 2.9e-07 60.1 264 28.8
THA.LOC104807615 Tarenaya hassleriana HOM05D002328 ORTHO05D002433 2.9e-07 60.1 166 30.1
BcaB02g07453 Brassica carinata HOM05D002328 ORTHO05D002433 3.7e-07 59.7 124 35.5
CiPaw.02G139900 Carya illinoinensis HOM05D002328 ORTHO05D002433 3.7e-07 59.7 105 42.9
Duzib147G0748 Durio zibethinus HOM05D002328 ORTHO05D002433 3.7e-07 59.7 114 36.8
Nitab4.5_0003819g0090 Nicotiana tabacum HOM05D002328 ORTHO05D002433 3.7e-07 59.7 122 36.1
Hund03204 Selenicereus undatus HOM05D002328 ORTHO05D002433 3.7e-07 59.7 144 31.9
Solyc01g104350.3 Solanum lycopersicum HOM05D002328 ORTHO05D002433 3.7e-07 59.7 118 37.3
Sc07g0007150 Simmondsia chinensis HOM05D002328 ORTHO05D002433 4.9e-07 59.3 175 29.7
PGSC0003DMG400023785 Solanum tuberosum HOM05D002328 ORTHO05D002433 4.9e-07 59.3 118 37.3
AL5G41740 Arabidopsis lyrata HOM05D002328 ORTHO05D002433 6.4e-07 58.9 121 36.4
EL10Ac3g06095 Beta vulgaris HOM05D002328 ORTHO05D002433 6.4e-07 58.9 165 29.1
AUR62013734 Chenopodium quinoa HOM05D002328 ORTHO05D002433 6.4e-07 58.9 276 29.0
CARHR170040 Cardamine hirsuta HOM05D002328 ORTHO05D002433 8.3e-07 58.5 121 36.4
arahy.Tifrunner.gnm1.ann1.K6L3AX Arachis hypogaea HOM05D002328 ORTHO05D002433 1.1e-06 58.2 146 34.2
Ca_18636_v3 Cicer arietinum L. HOM05D002328 ORTHO05D002433 1.4e-06 57.8 133 32.3
Thhalv10025086m.g Eutrema salsugineum HOM05D002328 ORTHO05D002433 1.4e-06 57.8 120 35.8
THA.LOC104804014 Tarenaya hassleriana HOM05D002328 ORTHO05D002433 1.4e-06 57.8 129 33.3
arahy.Tifrunner.gnm1.ann1.L505QV Arachis hypogaea HOM05D002328 ORTHO05D002433 1.9e-06 57.4 146 34.2
ATR0605G240 Amborella trichopoda HOM05D002328 ORTHO05D002433 2.4e-06 57.0 134 27.6
Migut.B01544 Erythranthe guttata HOM05D002328 ORTHO05D002433 2.4e-06 57.0 236 28.0
Sp5g03510 Schrenkiella parvula HOM05D002328 ORTHO05D002433 2.4e-06 57.0 121 35.5
ATR0691G305 Amborella trichopoda HOM05D002328 ORTHO05D002433 3.2e-06 56.6 134 29.1
DCAR_025069 Daucus carota HOM05D002328 ORTHO05D002433 3.2e-06 56.6 129 31.8
vmacro00694 Vaccinium macrocarpon HOM05D002328 ORTHO05D002433 3.2e-06 56.6 145 32.4
COL.COLO4_32816 Corchorus olitorius HOM05D000507 ORTHO05D002433 5.4e-06 55.8 157 28.0
A07p24740 Brassica napus HOM05D002328 ORTHO05D002433 7.0e-06 55.5 152 29.6
Duzib151G0293 Durio zibethinus HOM05D002328 ORTHO05D002433 7.0e-06 55.5 152 28.3
vmacro21055 Vaccinium macrocarpon HOM05D002328 ORTHO05D002433 7.0e-06 55.5 173 29.5
BraA07t30120Z Brassica rapa HOM05D002328 ORTHO05D002433 9.2e-06 55.1 152 29.6
Dinv44070 Davidia involucrata HOM05D002328 ORTHO05D002433 9.2e-06 55.1 242 27.3
Phvul.003G296900 Phaseolus vulgaris HOM05D002328 ORTHO05D002433 9.2e-06 55.1 145 28.3


User provided reference genes

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