Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g293400 Pisum sativum HOM05D001222 ORTHO05D025570 4.7e-58 227.6 113 100.0
TPR.G6772 Trifolium pratense HOM05D001222 ORTHO05D001195 3.4e-16 88.6 103 52.4
Medtr8g087990 Medicago truncatula HOM05D001222 ORTHO05D001195 1.1e-14 83.6 103 48.5
Ca_17872_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 4.1e-14 81.6 103 47.6
Cc00_g12820 Coffea canephora HOM05D001222 ORTHO05D001195 1.3e-12 76.6 103 44.7
PSO541G4347 Papaver somniferum HOM05D001222 ORTHO05D001195 1.7e-12 76.3 103 42.7
PSO675G1498 Papaver somniferum HOM05D001222 ORTHO05D001195 1.7e-12 76.3 103 42.7
arahy.Tifrunner.gnm1.ann1.PRG0CM Arachis hypogaea HOM05D001222 ORTHO05D001195 2.3e-12 75.9 103 44.7
arahy.Tifrunner.gnm1.ann1.YQR1YM Arachis hypogaea HOM05D001222 ORTHO05D001195 2.3e-12 75.9 103 44.7
Glyma.05G164100 Glycine max HOM05D001222 ORTHO05D001195 2.3e-12 75.9 103 44.7
FAN25G3863 Fragaria x ananassa HOM05D001222 ORTHO05D001195 3.0e-12 75.5 103 43.7
Lalb_Chr13g0295451 Lupinus albus HOM05D001222 ORTHO05D001195 3.0e-12 75.5 103 45.6
Actinidia39544 Actinidia chinensis HOM05D001222 ORTHO05D001195 3.9e-12 75.1 103 43.7
Migut.M00962 Erythranthe guttata HOM05D001222 ORTHO05D001195 3.9e-12 75.1 103 43.7
Glyma.08G121300 Glycine max HOM05D001222 ORTHO05D001195 5.0e-12 74.7 103 43.7
QL05p060764 Quercus lobata HOM05D001222 ORTHO05D001195 8.6e-12 73.9 103 44.7
VMungo0251G3507 Vigna mungo HOM05D001222 ORTHO05D001195 8.6e-12 73.9 103 42.7
Actinidia27189 Actinidia chinensis HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 42.7
MSTRG.7454 Avicennia marina HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 42.7
A03p51020 Brassica napus HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 39.8
Eucgr.D00347 Eucalyptus grandis HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 43.7
Lalb_Chr07g0186131 Lupinus albus HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 44.7
MD05G1292300 Malus domestica HOM05D001222 ORTHO05D001195 1.1e-11 73.6 103 42.7
Actinidia07665 Actinidia chinensis HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
ECA236G0311 Erigeron canadensis HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
FvH4_3g06560 Fragaria vesca HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
FAN11G0731 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
FAN16G0864 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
FAN21G1973 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
HanXRQChr04g0116391 Helianthus annuus HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
Phvul.002G244100 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
RcHm_v2.0_Chr5g0012601 Rosa chinensis HOM05D001222 ORTHO05D001195 1.5e-11 73.2 103 42.7
Aa31LG6G800 Aethionema arabicum HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 40.8
AUR62035807 Chenopodium quinoa HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 42.7
Duzib235G0473 Durio zibethinus HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 41.7
MD10G1268100 Malus domestica HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 42.7
Thecc.06G158300 Theobroma cacao HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 41.7
TWI09G1376 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 1.9e-11 72.8 103 42.7
Prupe.4G073100 Prunus persica HOM05D001222 ORTHO05D001195 2.5e-11 72.4 103 41.7
Manes.17G064300 Manihot esculenta HOM05D001222 ORTHO05D001195 3.3e-11 72.0 103 42.7
Cpa.g.sc17.106 Carica papaya HOM05D001222 ORTHO05D001195 4.3e-11 71.6 103 41.7
Lsat_1_v5_gn_7_26140 Lactuca sativa HOM05D001222 ORTHO05D001195 4.3e-11 71.6 103 41.7
Gohir.A06G135300 Gossypium hirsutum HOM05D001222 ORTHO05D001195 5.6e-11 71.2 103 39.8
Gohir.D06G140500 Gossypium hirsutum HOM05D001222 ORTHO05D001195 5.6e-11 71.2 103 39.8
Gorai.010G163900 Gossypium raimondii HOM05D001222 ORTHO05D001195 5.6e-11 71.2 103 39.8
Oeu021527.1 Olea europaea HOM05D001222 ORTHO05D001195 5.6e-11 71.2 103 41.7
Dinv03636 Davidia involucrata HOM05D001222 ORTHO05D001195 7.3e-11 70.9 103 40.8
Duzib192G0361 Durio zibethinus HOM05D001222 ORTHO05D001195 7.3e-11 70.9 103 40.8
BcaNung06647 Brassica carinata HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 38.8
C07p49440 Brassica napus HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 38.8
BolC7t45449H Brassica oleracea HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 38.8
BraA03t14187Z Brassica rapa HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 38.8
CANSAT35G1947 Cannabis sativa HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 40.8
TWI73G0017 Tripterygium wilfordii HOM05D001222 ORTHO05D001195 9.5e-11 70.5 103 41.7
CsaV3_1G032820 Cucumis sativus L. HOM05D001222 ORTHO05D001195 1.2e-10 70.1 103 42.7
FvH4_3g33220 Fragaria vesca HOM05D001222 ORTHO05D001195 1.2e-10 70.1 103 43.7
FAN11G1960 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.2e-10 70.1 103 43.7
Potri.001G354700 Populus trichocarpa HOM05D001222 ORTHO05D001195 1.6e-10 69.7 103 40.8
Sp7g16070 Schrenkiella parvula HOM05D001222 ORTHO05D001195 1.6e-10 69.7 103 37.9
GSVIVG01021367001 Vitis vinifera HOM05D001222 ORTHO05D001195 1.6e-10 69.7 103 40.8
CARHR224830 Cardamine hirsuta HOM05D001222 ORTHO05D001195 2.1e-10 69.3 103 37.9
MELO3C002699.2 Cucumis melo HOM05D001222 ORTHO05D001195 2.8e-10 68.9 103 41.7
Ah.09g232970 Amaranthus hybridus HOM05D001222 ORTHO05D001195 3.6e-10 68.6 103 40.8
CiPaw.09G130000 Carya illinoinensis HOM05D001222 ORTHO05D001195 3.6e-10 68.6 103 39.8
Potri.011G077500 Populus trichocarpa HOM05D001222 ORTHO05D001195 3.6e-10 68.6 108 38.9
Sc05g0006640 Simmondsia chinensis HOM05D001222 ORTHO05D001195 3.6e-10 68.6 103 40.8
Carub.0007s2327 Capsella rubella HOM05D001222 ORTHO05D001195 4.7e-10 68.2 103 36.9
Thhalv10025600m.g Eutrema salsugineum HOM05D001222 ORTHO05D001195 4.7e-10 68.2 103 36.9
THA.LOC104827737 Tarenaya hassleriana HOM05D001222 ORTHO05D001195 4.7e-10 68.2 103 39.8
Actinidia16750 Actinidia chinensis HOM05D001222 ORTHO05D001195 6.2e-10 67.8 103 39.8
CSS0016930 Camellia sinensis var. sinensis HOM05D001222 ORTHO05D001195 6.2e-10 67.8 103 38.8
AL7G36370 Arabidopsis lyrata HOM05D001222 ORTHO05D001195 8.1e-10 67.4 103 36.9
AT4G18060 Arabidopsis thaliana HOM05D001222 ORTHO05D001195 8.1e-10 67.4 103 36.9
Haze_05478 Corylus avellana HOM05D001222 ORTHO05D001195 8.1e-10 67.4 103 38.8
MBI02_g43138_MAGBIO Magnolia biondii HOM05D001222 ORTHO05D001195 8.1e-10 67.4 103 39.8
Atru.chr10.1417 Acer truncatum HOM05D001222 ORTHO05D001195 1.1e-09 67.0 103 41.7
Sed0005183 Sechium edule HOM05D001222 ORTHO05D001195 1.1e-09 67.0 103 39.8
TAR627G0032 Trochodendron aralioides HOM05D001222 ORTHO05D001195 1.1e-09 67.0 95 41.1
Cfa001037 Carpinus fangiana HOM05D001222 ORTHO05D001195 1.4e-09 66.6 103 37.9
Manes.15G116700 Manihot esculenta HOM05D001222 ORTHO05D001195 1.4e-09 66.6 103 39.8
PGR031G1512 Punica granatum HOM05D001222 ORTHO05D001195 1.4e-09 66.6 103 38.8
FAN16G1638 Fragaria x ananassa HOM05D001222 ORTHO05D001195 1.8e-09 66.2 41 73.2
TAR626G1545 Trochodendron aralioides HOM05D001222 ORTHO05D001195 1.8e-09 66.2 103 39.8
vmacro03979 Vaccinium macrocarpon HOM05D001222 ORTHO05D001195 1.8e-09 66.2 41 70.7
COL.COLO4_22805 Corchorus olitorius HOM05D001222 ORTHO05D001195 2.3e-09 65.9 103 37.9
Lj4g0000219 Lotus japonicus HOM05D001222 ORTHO05D001195 2.3e-09 65.9 103 42.7
unitig_37.g12109 Utricularia gibba HOM05D001222 ORTHO05D001195 2.3e-09 65.9 103 39.8
Hma1.2p1_0012F.1_g007650 Hydrangea macrophylla HOM05D001222 ORTHO05D001195 3.1e-09 65.5 108 37.0
Ah.14g086780 Amaranthus hybridus HOM05D001222 ORTHO05D001195 4.0e-09 65.1 103 41.7
Nn3g20930 Nelumbo nucifera HOM05D001222 ORTHO05D001195 4.0e-09 65.1 103 36.9
ClCG03G007230 Citrullus lanatus HOM05D001222 ORTHO05D001195 5.2e-09 64.7 44 68.2
Aqoxy4G00150 Aquilegia oxysepala HOM05D001222 ORTHO05D001195 6.8e-09 64.3 103 37.9
EL10Ac8g19802 Beta vulgaris HOM05D001222 ORTHO05D001195 6.8e-09 64.3 103 38.8
Oeu021530.1 Olea europaea HOM05D001222 ORTHO05D001195 6.8e-09 64.3 95 41.1
Os07g0508300 Oryza sativa ssp. japonica HOM05D001222 ORTHO05D001195 6.8e-09 64.3 103 37.9
SGA_v2.0_scaffold333G49025 Striga asiatica HOM05D001222 ORTHO05D001195 8.9e-09 63.9 95 42.1
Hma1.2p1_0012F.1_g007640 Hydrangea macrophylla HOM05D001222 ORTHO05D025570 1.5e-08 63.2 107 40.2
ATR0217G015 Amborella trichopoda HOM05D001222 ORTHO05D001195 2.0e-08 62.8 103 37.9
Sabra16G0233300 Salix brachista HOM05D001222 ORTHO05D001195 2.0e-08 62.8 103 36.9
FAN05G0940 Fragaria x ananassa HOM05D001222 ORTHO05D025570 2.6e-08 62.4 51 60.8
Solyc02g071330.4 Solanum lycopersicum HOM05D001222 ORTHO05D001195 2.6e-08 62.4 103 36.9
Sopen02g020390 Solanum pennellii HOM05D001222 ORTHO05D001195 2.6e-08 62.4 103 36.9
Peaxi162Scf00649g00057 Petunia axillaris HOM05D001222 ORTHO05D001195 3.4e-08 62.0 103 36.9
Sed0013828 Sechium edule HOM05D001222 ORTHO05D001195 3.4e-08 62.0 44 65.9
Lj2A312T39 Lonicera japonica HOM05D001222 ORTHO05D001195 4.4e-08 61.6 44 61.4
PGSC0003DMG400003076 Solanum tuberosum HOM05D001222 ORTHO05D001195 5.8e-08 61.2 103 35.9
CAN.G257.56 Capsicum annuum HOM05D001222 ORTHO05D001195 7.5e-08 60.8 103 35.9
Lj1A1181T111 Lonicera japonica HOM05D001222 ORTHO05D001195 9.9e-08 60.5 44 63.6
SalBow8G2139 Salvia bowleyana HOM05D001222 ORTHO05D001195 9.9e-08 60.5 44 63.6
HPP92_018434 Vanilla planifolia HOM05D001222 ORTHO05D001195 9.9e-08 60.5 44 63.6
Zm00001eb105750 Zea mays HOM05D001222 ORTHO05D001195 1.7e-07 59.7 103 35.9
CDE05G1503 Ceratophyllum demersum HOM05D001222 ORTHO05D001195 2.9e-07 58.9 103 34.0
Nitab4.5_0001283g0050 Nicotiana tabacum HOM05D001222 ORTHO05D001195 2.9e-07 58.9 103 35.0
Nitab4.5_0003714g0080 Nicotiana tabacum HOM05D001222 ORTHO05D001195 2.9e-07 58.9 103 35.0
SEGI_06364 Sequoiadendron giganteum HOM05D001222 ORTHO05D001195 1.1e-06 57.0 103 35.0
Zm00001eb307560 Zea mays HOM05D001222 ORTHO05D001195 1.1e-06 57.0 44 59.1
Lj1g0027647 Lotus japonicus HOM05D001222 ORTHO05D001195 1.9e-06 56.2 108 36.1
Ca_15342_v3 Cicer arietinum L. HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
Glyma.04G009000 Glycine max HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
Glyma.06G008900 Glycine max HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
Medtr3g117350 Medicago truncatula HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
Phvul.009G004000 Phaseolus vulgaris HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
VMungo1309G1527 Vigna mungo HOM05D001222 ORTHO05D001195 4.1e-06 55.1 108 36.1
arahy.Tifrunner.gnm1.ann1.LTF9KA Arachis hypogaea HOM05D001222 ORTHO05D001195 9.2e-06 53.9 108 36.1
arahy.Tifrunner.gnm1.ann1.ZY7QH2 Arachis hypogaea HOM05D001222 ORTHO05D001195 9.2e-06 53.9 108 36.1
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 9.2e-06 53.9 36 63.9


User provided reference genes

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