Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-68 263.1 129 100.0
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.1e-34 150.2 115 73.0
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.3e-32 143.3 115 69.6
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.7e-32 142.9 115 69.6
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 2.8e-30 135.6 120 64.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.2e-28 130.2 120 62.5
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.5e-28 129.8 134 57.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 2.0e-28 129.4 100 72.0
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 5.7e-28 127.9 115 62.6
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 9.8e-28 127.1 120 60.8
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.3e-27 126.7 115 61.7
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.2e-27 125.9 117 62.4
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.5e-23 113.2 135 51.1
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.9e-23 112.8 138 52.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.0e-22 107.5 137 47.4
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.0e-22 107.5 137 47.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.0e-21 107.1 128 53.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.8e-21 106.3 133 48.9
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.8e-21 106.3 133 48.9
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.0e-21 105.1 130 50.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 8.9e-21 104.0 133 49.6
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 8.9e-21 104.0 137 51.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.5e-20 103.2 125 49.6
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.0e-20 102.8 137 48.9
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.0e-20 102.8 135 48.1
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.0e-20 102.8 137 48.2
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.0e-20 102.8 132 47.0
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.0e-20 102.8 109 55.0
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.6e-20 102.4 132 47.0
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.4e-20 101.7 110 52.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 5.7e-20 101.3 137 48.2
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.3e-19 100.1 123 49.6
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.3e-19 100.1 123 49.6
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 1.7e-19 99.8 134 46.3
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.2e-19 99.4 137 46.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.2e-19 99.4 130 46.9
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.9e-19 99.0 137 46.7
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.9e-19 99.0 136 47.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.9e-19 99.0 137 46.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.7e-19 98.6 130 46.9
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.9e-19 98.2 125 46.4
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 6.4e-19 97.8 121 48.8
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 6.4e-19 97.8 121 52.9
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 8.3e-19 97.4 136 46.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-18 97.1 121 50.4
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.4e-18 96.7 121 48.8
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.8e-18 96.3 121 48.8
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 3.2e-18 95.5 137 45.3
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 4.1e-18 95.1 133 46.6
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 5.4e-18 94.7 134 43.3
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.6e-17 93.2 131 43.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.6e-17 93.2 109 51.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.0e-17 92.8 131 43.5
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 2.0e-17 92.8 137 44.5
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.0e-17 92.8 131 46.6
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 2.7e-17 92.4 115 53.0
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 2.7e-17 92.4 103 50.5
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.7e-17 92.4 121 47.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.7e-17 92.4 131 45.8
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 3.5e-17 92.0 137 46.0
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 5.9e-17 91.3 126 46.0
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 1.3e-16 90.1 132 47.0
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.9e-16 88.6 105 49.5
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 3.9e-16 88.6 133 43.6
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.9e-16 88.6 107 49.5
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 5.0e-16 88.2 137 43.8
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 5.0e-16 88.2 103 49.5
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 6.6e-16 87.8 137 41.6
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 8.6e-16 87.4 130 42.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.1e-15 87.0 130 43.1
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-15 87.0 114 50.0
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.1e-15 87.0 130 40.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.5e-15 86.7 130 40.8
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.5e-15 86.7 130 42.3
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.9e-15 86.3 134 45.5
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.5e-15 85.9 130 40.8
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.5e-15 85.9 130 43.1
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 2.5e-15 85.9 133 42.1
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.3e-15 85.5 127 44.9
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.3e-15 85.5 121 45.5
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 9.5e-15 84.0 109 45.9
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.2e-14 83.6 85 55.3
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.2e-14 83.6 130 40.8
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 2.1e-14 82.8 130 40.0
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 2.1e-14 82.8 110 44.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.8e-14 82.4 114 46.5
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.1e-13 80.5 118 41.5
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.1e-13 80.5 131 43.5
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.4e-13 80.1 130 42.3
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.8e-13 79.7 103 43.7
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.3e-13 79.3 122 45.9
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 4.0e-13 78.6 130 42.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.6e-12 75.9 130 38.5
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 9.8e-12 73.9 110 42.7
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 6.4e-11 71.2 104 43.3
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 6.4e-11 71.2 104 43.3
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 8.3e-11 70.9 33 100.0
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.4e-10 68.2 111 42.3
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.7e-09 65.9 126 42.1
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 6.0e-09 64.7 80 45.0
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 6.0e-09 64.7 37 83.8
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 6.0e-09 64.7 121 34.7
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 8.6e-08 60.8 106 39.6
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.1e-06 56.2 105 36.2
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.6e-06 55.5 64 40.6


User provided reference genes

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