Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 5.5e-101 370.9 184 100.0
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 4.1e-96 354.8 184 95.1
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 5.6e-93 344.4 184 92.4
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 3.6e-92 341.7 184 90.8
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.6e-92 341.7 184 91.3
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 6.1e-92 340.9 184 91.3
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 4.0e-91 338.2 184 90.2
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 7.0e-88 327.4 184 86.4
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 6.2e-84 314.3 186 81.7
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.0e-82 309.3 186 80.6
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.9e-80 302.8 186 78.5
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 6.0e-79 297.7 186 75.8
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.0e-78 295.4 186 76.3
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 3.9e-78 295.0 186 76.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 6.6e-78 294.3 186 74.7
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 6.6e-78 294.3 186 74.7
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 8.6e-78 293.9 186 75.3
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.1e-77 293.5 181 76.8
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.5e-77 293.1 186 74.7
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.9e-77 292.7 186 74.7
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.9e-77 292.7 186 74.2
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.9e-77 292.7 186 75.3
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 2.5e-77 292.4 186 75.3
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.5e-77 292.4 186 73.7
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.3e-77 291.6 186 73.7
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.3e-77 291.6 186 73.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.3e-77 291.6 185 74.6
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.3e-77 291.6 186 75.3
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 5.6e-77 291.2 186 75.8
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 7.3e-77 290.8 180 77.8
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.2e-76 290.0 186 75.3
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.2e-76 290.0 186 73.7
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.6e-76 289.7 186 73.7
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 2.1e-76 289.3 186 75.8
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.1e-76 289.3 185 71.9
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.8e-76 288.9 181 75.1
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.8e-76 288.9 186 73.1
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 2.8e-76 288.9 186 74.2
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 2.8e-76 288.9 182 73.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.6e-76 288.5 186 72.6
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.6e-76 288.5 186 72.6
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 3.6e-76 288.5 182 73.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 3.6e-76 288.5 185 74.6
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 3.6e-76 288.5 186 75.8
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 4.7e-76 288.1 186 75.3
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 4.7e-76 288.1 186 73.1
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 4.7e-76 288.1 186 72.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 4.7e-76 288.1 186 74.7
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.7e-76 288.1 181 76.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 4.7e-76 288.1 186 73.1
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 8.1e-76 287.3 186 74.2
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 8.1e-76 287.3 186 74.7
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 8.1e-76 287.3 186 74.2
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.1e-75 287.0 186 73.1
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.1e-75 287.0 186 74.2
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.1e-75 287.0 180 76.7
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.4e-75 286.6 184 73.4
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.4e-75 286.6 184 74.5
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.4e-75 286.6 185 74.1
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.8e-75 286.2 186 73.7
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.8e-75 286.2 186 72.6
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.8e-75 286.2 181 76.2
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.3e-75 285.8 186 74.2
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.3e-75 285.8 186 74.7
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 3.1e-75 285.4 186 73.7
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 4.0e-75 285.0 181 73.5
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 4.0e-75 285.0 186 73.1
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 4.0e-75 285.0 184 73.4
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 4.0e-75 285.0 186 74.7
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 4.0e-75 285.0 186 71.5
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 5.2e-75 284.6 182 73.6
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 8.9e-75 283.9 186 73.1
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 8.9e-75 283.9 186 74.2
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 8.9e-75 283.9 186 72.6
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.2e-74 283.5 186 72.6
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.2e-74 283.5 181 72.9
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.2e-74 283.5 182 72.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 1.5e-74 283.1 185 74.1
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.0e-74 282.7 186 73.7
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-74 282.7 186 73.7
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-74 282.7 186 73.7
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.0e-74 282.7 181 72.9
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.6e-74 282.3 181 72.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 2.6e-74 282.3 178 74.7
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.6e-74 282.3 186 73.7
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 3.4e-74 282.0 181 72.4
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 4.4e-74 281.6 181 72.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 7.6e-74 280.8 181 71.3
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 7.6e-74 280.8 181 71.8
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 7.6e-74 280.8 181 71.8
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 7.6e-74 280.8 181 71.8
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 7.6e-74 280.8 181 71.8
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 7.6e-74 280.8 180 73.3
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 7.6e-74 280.8 180 73.3
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 9.9e-74 280.4 181 71.8
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-73 280.0 181 71.8
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.3e-73 280.0 186 71.5
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.7e-73 279.6 184 72.3
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 2.2e-73 279.3 181 71.3
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.2e-73 279.3 180 73.9
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.9e-73 278.9 186 73.7
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.7e-73 278.5 184 71.2
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.7e-73 278.5 186 71.0
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 4.9e-73 278.1 181 71.3
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.9e-73 278.1 186 72.0
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.4e-73 277.7 186 71.0
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.4e-72 275.8 181 71.8
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 5.4e-72 274.6 181 70.2
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 5.4e-72 274.6 181 70.2
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 5.4e-72 274.6 186 70.4
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 7.1e-72 274.2 174 75.3
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 4.6e-71 271.6 183 71.6
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 6.6e-70 267.7 181 70.7
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 9.6e-69 263.8 172 72.1
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.6e-68 263.1 181 69.6
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 2.1e-68 262.7 185 66.5
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 2.2e-65 252.7 180 66.1
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.9e-64 249.6 173 69.4
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.2e-64 248.8 186 62.4
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 7.3e-61 237.7 187 61.5
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.6e-55 219.9 182 54.4
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.6e-53 211.5 186 54.8
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 8.1e-52 207.6 181 53.0
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 4.9e-49 198.4 170 58.8
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 5.4e-48 194.9 181 51.4
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.4e-48 194.9 183 48.6
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 1.6e-44 183.3 151 58.9
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 8.1e-44 181.0 182 44.5
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.2e-39 167.2 180 48.3
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.7e-33 146.7 194 44.3
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 6.5e-33 144.8 87 79.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 4.6e-23 112.1 82 64.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 7.7e-18 94.7 158 34.2
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.1e-16 90.9 54 74.1


User provided reference genes

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