Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 5.8e-45 184.1 111 100.0
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.2e-43 178.3 111 97.3
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 4.5e-29 131.3 113 65.5
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 4.5e-29 131.3 113 65.5
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 3.0e-25 118.6 112 74.1
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.1e-24 116.7 58 87.9
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.2e-21 106.7 111 54.1
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.4e-19 99.8 58 77.6
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.2e-19 98.6 59 79.7
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.2e-19 98.6 59 79.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 3.2e-19 98.6 58 75.9
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 4.2e-19 98.2 58 74.1
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.5e-19 97.8 58 72.4
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.1e-19 97.4 46 91.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 7.1e-19 97.4 58 74.1
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 7.1e-19 97.4 55 74.5
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 9.3e-19 97.1 51 82.4
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 9.3e-19 97.1 51 82.4
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.3e-19 97.1 58 74.1
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 9.3e-19 97.1 59 74.6
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 9.3e-19 97.1 46 89.1
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 72.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 72.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 72.4
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 72.4
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 70.7
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 1.2e-18 96.7 58 75.9
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.6e-18 96.3 56 75.0
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.6e-18 96.3 51 82.4
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.6e-18 96.3 58 70.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.1e-18 95.9 57 73.7
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.1e-18 95.9 58 70.7
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 2.1e-18 95.9 45 88.9
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 2.7e-18 95.5 46 87.0
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 2.7e-18 95.5 59 69.5
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 3.5e-18 95.1 46 87.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.5e-18 95.1 46 87.0
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 3.5e-18 95.1 45 86.7
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 3.5e-18 95.1 56 76.8
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.5e-18 95.1 51 76.5
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.5e-18 95.1 46 84.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 4.6e-18 94.7 68 66.2
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 4.6e-18 94.7 68 66.2
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 4.6e-18 94.7 68 66.2
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.6e-18 94.7 59 72.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 4.6e-18 94.7 46 87.0
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.6e-18 94.7 46 84.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.6e-18 94.7 46 84.8
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 4.6e-18 94.7 44 88.6
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 4.6e-18 94.7 46 87.0
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.6e-18 94.7 46 87.0
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 6.0e-18 94.4 58 70.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 6.0e-18 94.4 59 72.9
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 6.0e-18 94.4 46 87.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 7.9e-18 94.0 51 80.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 7.9e-18 94.0 46 84.8
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.9e-18 94.0 68 66.2
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 7.9e-18 94.0 57 73.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 1.0e-17 93.6 52 75.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.0e-17 93.6 55 74.5
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.0e-17 93.6 46 84.8
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.0e-17 93.6 46 84.8
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.0e-17 93.6 46 87.0
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.0e-17 93.6 58 69.0
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.0e-17 93.6 58 69.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.0e-17 93.6 58 69.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.3e-17 93.2 46 87.0
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.3e-17 93.2 58 70.7
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.3e-17 93.2 57 71.9
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.3e-17 93.2 46 84.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.3e-17 93.2 46 84.8
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.3e-17 93.2 46 84.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.8e-17 92.8 46 82.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.8e-17 92.8 46 82.6
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.8e-17 92.8 68 64.7
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.8e-17 92.8 68 64.7
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.8e-17 92.8 46 82.6
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.3e-17 92.4 50 78.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.3e-17 92.4 46 82.6
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.3e-17 92.4 59 72.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 2.3e-17 92.4 58 69.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.3e-17 92.4 58 70.7
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.3e-17 92.4 46 84.8
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 3.0e-17 92.0 46 84.8
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.0e-17 92.0 52 76.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 3.0e-17 92.0 56 75.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 3.0e-17 92.0 60 70.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.9e-17 91.7 46 84.8
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.9e-17 91.7 46 84.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.9e-17 91.7 57 70.2
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 3.9e-17 91.7 46 82.6
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.1e-17 91.3 46 80.4
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 5.1e-17 91.3 46 84.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 6.7e-17 90.9 46 82.6
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.7e-17 90.9 58 70.7
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 6.7e-17 90.9 57 75.4
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.7e-17 90.9 46 80.4
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 6.7e-17 90.9 46 82.6
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 6.7e-17 90.9 46 87.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 6.7e-17 90.9 46 82.6
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 8.7e-17 90.5 46 84.8
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 8.7e-17 90.5 59 69.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 8.7e-17 90.5 59 69.5
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 8.7e-17 90.5 46 84.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 8.7e-17 90.5 60 68.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 8.7e-17 90.5 60 68.3
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.1e-16 90.1 52 75.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.5e-16 89.7 57 68.4
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.5e-16 89.7 56 71.4
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.5e-16 89.7 46 80.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.5e-16 89.7 46 82.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.5e-16 89.7 56 67.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.5e-16 89.7 46 80.4
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.5e-16 89.7 57 68.4
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.5e-16 89.7 57 68.4
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.9e-16 89.4 49 77.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.9e-16 89.4 47 85.1
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.9e-16 89.4 45 82.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.9e-16 89.4 51 70.6
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.3e-16 88.6 46 82.6
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 3.3e-16 88.6 59 67.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 3.3e-16 88.6 58 67.2
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.3e-16 88.6 58 67.2
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 4.3e-16 88.2 51 72.5
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 4.3e-16 88.2 60 70.0
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.3e-16 88.2 47 78.7
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.3e-16 88.2 57 68.4
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 4.3e-16 88.2 46 80.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.7e-16 87.8 45 82.2
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.7e-16 87.8 59 69.5
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 7.4e-16 87.4 46 80.4
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 9.7e-16 87.0 50 72.0
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 9.7e-16 87.0 44 77.3
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.3e-15 86.7 43 86.0
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.3e-15 86.7 57 66.7
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.3e-15 86.7 45 82.2
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.6e-15 86.3 46 80.4
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.8e-15 85.5 47 78.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.8e-14 82.8 46 73.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.8e-14 82.8 42 78.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 5.9e-13 77.8 46 71.7
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 5.0e-12 74.7 44 70.5
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.5e-12 74.3 38 78.9
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.5e-12 74.3 38 78.9
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 2.1e-10 69.3 49 65.3
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.7e-10 68.9 57 59.6
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 5.7e-08 61.2 33 78.8


User provided reference genes

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