Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.4e-76 289.7 156 100.0
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.7e-63 246.1 156 84.6
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 2.2e-58 229.2 156 82.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 6.2e-53 211.1 156 75.6
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.1e-52 210.3 156 67.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.4e-52 209.9 157 76.4
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.5e-51 206.5 156 73.7
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.5e-51 206.5 156 72.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 4.5e-51 204.9 156 75.0
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 3.8e-50 201.8 156 72.4
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 7.9e-48 194.1 158 72.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 7.9e-48 194.1 157 71.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.3e-47 192.6 156 71.8
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 2.3e-47 192.6 158 68.4
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.3e-45 186.8 147 71.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.6e-45 186.4 146 71.2
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.1e-44 183.7 158 57.6
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 7.6e-43 177.6 158 56.3
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 6.5e-42 174.5 158 59.5
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 6.5e-42 174.5 156 60.3
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 6.5e-42 174.5 158 55.7
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 8.4e-42 174.1 148 54.7
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.4e-41 173.3 158 55.1
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.2e-41 171.8 157 53.5
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.3e-41 170.6 148 61.5
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.0e-40 167.9 156 57.7
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 6.0e-40 167.9 156 57.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 6.0e-40 167.9 158 50.6
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 7.9e-40 167.5 158 50.6
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.0e-39 167.2 139 57.6
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.3e-39 166.8 157 58.6
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.3e-39 166.8 158 50.6
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.3e-39 166.8 154 53.9
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-39 166.4 158 51.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 5.1e-39 164.9 144 56.9
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.7e-39 164.1 138 55.8
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.1e-38 163.7 143 62.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.9e-38 162.9 103 68.0
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.9e-38 162.9 139 58.3
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.9e-38 162.9 141 58.2
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 3.3e-38 162.2 156 55.1
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 5.7e-38 161.4 103 69.9
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 7.4e-38 161.0 103 68.0
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.4e-38 161.0 139 62.6
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 9.7e-38 160.6 122 61.5
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.3e-37 160.2 150 53.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.6e-37 159.8 144 59.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.8e-37 159.1 146 61.0
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.8e-37 159.1 146 61.0
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.8e-37 159.1 146 61.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.7e-37 158.7 132 53.8
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.8e-37 158.3 162 58.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 6.3e-37 157.9 157 56.1
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.2e-37 157.5 160 55.6
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-36 156.8 156 50.0
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.8e-36 156.4 132 53.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.8e-36 156.4 158 56.3
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.8e-36 156.4 150 53.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 3.1e-36 155.6 158 59.5
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.1e-36 155.6 142 63.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 4.1e-36 155.2 160 57.5
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 6.9e-36 154.5 131 55.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 9.0e-36 154.1 134 53.0
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.5e-35 153.3 152 60.5
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.4e-35 152.1 149 61.7
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 3.4e-35 152.1 139 54.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 4.5e-35 151.8 133 63.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 4.5e-35 151.8 123 59.3
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 5.9e-35 151.4 133 63.9
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.7e-35 151.0 124 56.5
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 7.7e-35 151.0 141 57.4
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-34 150.6 136 52.2
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-34 150.2 158 49.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.3e-34 150.2 114 61.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.7e-34 149.8 155 47.7
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.7e-34 149.8 157 52.2
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.7e-34 149.8 111 64.0
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.2e-34 149.4 140 50.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.9e-34 149.1 125 54.4
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.9e-34 149.1 141 51.1
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.9e-34 149.1 126 64.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 3.8e-34 148.7 160 48.8
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 3.8e-34 148.7 160 48.8
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 3.8e-34 148.7 142 50.7
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.8e-34 148.7 80 75.0
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 5.0e-34 148.3 110 60.0
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 6.5e-34 147.9 124 66.1
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 8.5e-34 147.5 103 62.1
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 164 48.2
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.1e-33 147.1 142 58.5
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.4e-33 146.7 81 74.1
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.4e-33 146.7 126 58.7
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.9e-33 146.4 146 55.5
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 2.5e-33 146.0 79 77.2
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 3.2e-33 145.6 143 55.2
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 3.2e-33 145.6 75 78.7
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.2e-33 145.2 153 55.6
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 4.2e-33 145.2 147 48.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 4.2e-33 145.2 143 53.8
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 5.5e-33 144.8 135 55.6
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 7.2e-33 144.4 157 48.4
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 9.4e-33 144.1 135 59.3
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 2.7e-32 142.5 86 73.3
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.7e-32 142.5 76 78.9
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 3.6e-32 142.1 79 75.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 7.9e-32 141.0 76 77.6
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.0e-31 140.6 83 71.1
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.0e-31 140.6 122 55.7
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-31 139.8 142 48.6
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 8.8e-31 137.5 74 77.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 7.4e-30 134.4 147 49.7
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.1e-28 130.6 149 45.6
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.3e-26 123.6 141 51.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.3e-26 123.6 110 49.1
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 8.5e-26 120.9 135 56.3
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.2e-25 117.9 151 41.7
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.0e-23 114.0 137 42.3
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-23 113.2 95 55.8
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-23 112.8 129 47.3
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 2.3e-23 112.8 115 60.0
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 8.8e-23 110.9 170 40.6
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.1e-22 110.5 106 61.3
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.7e-22 108.2 85 58.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 8.2e-21 104.4 53 81.1
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 3.1e-20 102.4 52 80.8
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.7e-18 96.7 96 63.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 2.5e-17 92.8 81 53.1
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 3.2e-17 92.4 75 50.7
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 7.2e-17 91.3 158 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.6e-16 90.1 78 50.0
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.3e-15 86.3 136 40.4
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.5e-14 83.6 77 51.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.0e-14 83.2 76 52.6
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 3.3e-14 82.4 53 67.9
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.4e-14 82.0 88 45.5
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 5.0e-10 68.6 75 41.3
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 8.5e-10 67.8 76 42.1
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 3.2e-09 65.9 80 57.5
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.0e-07 60.8 46 52.2
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 1.4e-07 60.5 39 64.1
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-07 60.1 45 53.3
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 6.7e-07 58.2 47 55.3


User provided reference genes

Program Settings