Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.7e-312 1073.5 545 100.0
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.6e-274 947.2 547 88.8
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.0e-255 885.6 552 83.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.0e-251 871.7 548 80.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.2e-249 866.3 548 80.1
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.0e-243 846.7 548 78.1
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 6.6e-243 844.0 548 77.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.5e-242 842.0 552 77.5
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 3.8e-238 828.2 541 79.9
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.5e-231 806.2 553 77.0
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 2.3e-227 792.3 555 73.5
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.6e-220 768.1 550 71.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-207 726.1 549 66.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-207 726.1 549 66.8
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.9e-207 724.5 554 66.6
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-206 722.2 554 66.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-197 693.3 556 62.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.9e-196 687.6 558 64.0
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.7e-195 684.5 549 63.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 5.7e-194 681.4 558 62.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 7.4e-194 681.0 549 63.8
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-191 673.7 545 62.6
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 3.4e-191 672.2 554 63.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.2e-190 669.5 555 63.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.9e-190 669.1 554 63.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 3.8e-190 668.7 552 63.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.5e-189 666.0 555 62.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.2e-189 665.6 576 58.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.2e-189 665.2 557 61.9
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.2e-189 665.2 553 61.8
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 3.6e-188 662.1 553 61.5
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-187 660.2 545 60.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.3e-187 659.4 551 62.1
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.9e-187 658.7 553 62.2
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 3.9e-187 658.7 555 61.3
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 5.2e-187 658.3 550 62.4
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 5.7e-186 654.8 547 61.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.2e-185 652.9 561 62.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.8e-185 652.5 564 60.5
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.8e-185 651.7 546 62.8
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.6e-183 646.7 560 59.5
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 7.7e-183 644.4 548 61.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-182 644.0 563 59.7
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.2e-182 642.9 541 62.3
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.2e-182 642.9 560 60.2
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.8e-182 642.1 564 60.1
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.0e-182 641.7 545 61.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.5e-182 641.0 557 61.6
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.1e-181 640.6 537 61.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.1e-181 640.6 557 61.2
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.9e-181 639.8 540 61.7
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 4.2e-181 638.6 548 60.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.1e-180 636.3 550 59.5
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 6.1e-180 634.8 551 60.1
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.8e-179 633.3 562 58.9
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.3e-179 632.9 561 58.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 4.4e-178 628.6 543 61.0
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 1.3e-177 627.1 555 59.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-177 627.1 547 60.0
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 3.7e-177 625.5 564 59.0
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 3.7e-177 625.5 549 59.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.8e-177 625.2 563 59.1
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 8.2e-177 624.4 549 59.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 4.1e-176 622.1 569 58.7
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 9.1e-176 620.9 567 58.7
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-175 620.5 567 58.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.6e-175 620.2 564 58.0
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.5e-175 619.0 567 58.6
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.5e-175 619.0 567 58.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 4.5e-175 618.6 568 58.1
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 7.7e-175 617.8 561 57.0
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.3e-174 617.1 562 58.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.7e-174 616.7 433 71.8
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 5.0e-174 615.1 548 59.5
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 5.0e-174 615.1 556 59.5
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.5e-173 613.6 545 58.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.9e-173 613.2 579 56.6
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 7.2e-173 611.3 566 57.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 9.4e-173 610.9 566 58.0
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 9.4e-173 610.9 567 58.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 9.4e-173 610.9 564 58.5
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.2e-172 610.5 567 59.1
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.6e-172 609.0 463 66.1
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.6e-172 609.0 487 63.7
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-171 606.7 553 58.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.3e-171 606.3 569 56.8
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 8.8e-171 604.4 558 57.5
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 8.8e-171 604.4 553 58.6
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 2.0e-170 603.2 552 58.5
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-170 602.8 562 57.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-170 602.8 557 57.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 7.5e-170 601.3 567 57.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.2e-169 599.7 549 57.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-169 599.4 563 57.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 4.8e-169 598.6 562 57.3
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-168 597.4 555 57.1
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.4e-168 597.0 576 55.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.8e-166 589.0 431 67.5
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 5.0e-166 588.6 573 55.7
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.8e-164 582.8 573 52.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 6.1e-164 581.6 556 55.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 2.3e-163 579.7 561 55.3
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 7.5e-162 574.7 565 55.8
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-160 570.5 562 55.3
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.5e-159 565.8 561 53.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 4.5e-159 565.5 548 55.5
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.4e-155 553.9 551 57.0
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.2e-155 552.0 441 63.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.8e-154 548.5 580 50.5
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.2e-153 546.6 438 62.6
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 9.2e-152 541.2 524 56.5
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 4.6e-151 538.9 556 53.1
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 6.6e-150 535.0 402 65.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-147 527.7 554 52.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.4e-147 527.3 557 53.1
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 3.1e-147 526.2 551 52.6
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 4.4e-146 522.3 384 66.7
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 9.8e-146 521.2 550 51.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 9.2e-144 514.6 495 53.5
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-136 491.1 337 70.3
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.1e-132 474.9 525 51.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.8e-130 468.8 544 49.8
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 3.4e-122 443.0 559 46.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.9e-120 437.2 301 70.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.2e-111 407.9 475 50.3
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.8e-110 404.1 440 43.9
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-105 387.9 395 52.7
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 6.5e-89 332.4 485 45.2
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.2e-88 330.1 375 41.9
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 9.4e-80 302.0 320 54.1
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.6e-79 300.1 290 54.5
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 6.1e-79 299.3 369 45.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.1e-77 295.0 190 72.6
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-74 285.0 197 66.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.4e-72 275.4 357 45.1
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-64 251.9 155 78.1
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.1e-48 198.7 190 53.7
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 4.5e-42 176.8 226 47.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.9e-41 173.7 276 42.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.2e-36 157.9 292 38.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.9e-36 157.5 171 51.5
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 3.3e-32 144.1 474 26.4
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 3.2e-27 127.5 96 63.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-26 124.0 92 64.1
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-18 97.8 74 63.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 4.6e-18 97.1 70 65.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-17 95.9 70 64.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.1e-17 93.6 78 59.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.6e-17 93.2 180 29.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.6e-16 89.4 147 41.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 5.8e-13 80.1 115 40.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-11 75.9 58 63.8
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.3e-09 68.2 73 46.6
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.3e-07 62.4 50 58.0
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.6e-07 62.0 75 45.3
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.6e-07 62.0 116 40.5


User provided reference genes

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