Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.0e-155 552.4 272 100.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.0e-114 417.2 270 75.6
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.2e-109 399.4 270 72.6
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 2.8e-109 399.1 270 71.5
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.4e-108 396.0 271 73.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.0e-106 388.3 270 71.1
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 6.1e-104 381.3 270 68.1
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 9.1e-100 367.5 270 65.2
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.0e-86 323.2 259 60.6
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.4e-86 322.0 271 59.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.4e-84 317.0 278 57.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.2e-83 313.9 237 62.9
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.6e-83 313.5 247 65.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.6e-83 313.5 236 63.1
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.0e-83 313.2 270 58.5
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 5.9e-83 311.6 271 58.7
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 5.9e-83 311.6 237 62.4
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.0e-82 310.8 237 62.4
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.7e-82 310.1 277 56.7
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.7e-82 310.1 235 64.3
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 8.5e-82 307.8 276 56.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.9e-81 306.6 238 62.6
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.5e-81 306.2 267 56.2
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 4.2e-81 305.4 234 63.2
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.2e-81 305.4 272 56.6
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 9.4e-81 304.3 239 59.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.1e-80 303.1 243 59.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.7e-80 302.8 236 62.7
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.8e-79 300.1 241 60.2
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.0e-79 299.3 237 60.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 4.0e-79 298.9 247 58.3
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 6.8e-79 298.1 237 59.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.0e-78 296.6 276 55.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.6e-78 296.2 221 67.9
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.4e-78 295.4 239 59.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.4e-78 295.4 254 56.7
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 4.4e-78 295.4 264 58.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 7.5e-78 294.7 264 54.5
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 9.8e-78 294.3 237 60.3
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.3e-77 293.9 237 59.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.7e-77 293.5 231 62.3
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.8e-77 292.0 239 58.6
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 4.8e-77 292.0 237 59.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 8.3e-77 291.2 240 59.6
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.3e-77 291.2 230 60.4
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.4e-76 290.4 241 59.3
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 9.1e-76 287.7 241 58.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.6e-75 287.0 232 57.3
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.6e-75 287.0 260 55.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.0e-75 286.6 271 53.9
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.0e-75 286.6 230 60.0
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.5e-75 285.8 230 59.1
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.5e-75 285.8 277 54.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.5e-75 285.8 269 53.9
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.5e-75 285.8 230 60.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.5e-75 285.8 278 52.2
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 4.5e-75 285.4 241 57.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 7.7e-75 284.6 264 56.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.0e-74 284.3 241 57.7
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-74 283.5 277 53.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.9e-74 282.7 231 57.6
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 5.0e-74 282.0 236 58.5
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 8.5e-74 281.2 228 57.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 8.5e-74 281.2 241 56.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.9e-73 280.0 240 57.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.9e-73 280.0 240 57.1
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.5e-73 279.6 248 55.2
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.5e-73 278.5 269 54.3
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 7.2e-73 278.1 238 57.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 7.2e-73 278.1 239 57.7
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 7.2e-73 278.1 239 57.7
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-72 277.3 236 56.4
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.7e-72 276.2 241 55.6
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.7e-72 276.2 270 54.1
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.6e-72 275.8 269 53.2
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.7e-72 275.4 236 55.9
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 6.1e-72 275.0 230 57.0
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.4e-71 273.9 254 54.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.0e-71 272.3 225 58.7
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 4.0e-71 272.3 238 56.7
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 8.8e-71 271.2 203 62.6
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 2.0e-70 270.0 241 56.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.2e-68 261.2 271 50.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 7.7e-67 258.1 195 61.5
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.1e-65 254.2 195 61.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-65 253.8 216 56.5
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.5e-65 253.1 222 56.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.6e-64 249.2 239 54.0
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.7e-61 240.4 260 49.6
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.2e-61 240.0 184 60.9
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.2e-61 240.0 242 50.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.8e-60 236.9 238 51.3
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.4e-60 235.3 220 53.6
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.0e-59 233.4 236 49.6
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.9e-59 231.9 242 49.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 4.3e-57 225.7 219 52.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.2e-56 224.2 221 52.5
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.8e-56 223.0 178 65.2
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-53 214.2 186 55.4
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.7e-53 212.6 235 48.5
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.9e-53 212.2 181 56.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.2e-46 191.0 160 57.5
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-40 170.6 202 47.5
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.1e-40 170.2 123 63.4
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-38 163.3 185 48.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.9e-36 157.1 119 59.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.9e-33 147.1 214 37.4
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 7.6e-30 135.2 118 55.1
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.9e-30 134.8 125 54.4
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-28 131.0 143 46.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.2e-28 129.4 116 55.2
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-25 119.4 121 47.9
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.0e-23 111.7 249 34.5
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.2e-22 111.3 112 51.8
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.3e-21 107.8 74 66.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-20 104.4 101 50.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 6.0e-19 99.0 86 51.2
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.4e-17 92.0 71 62.0
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.2e-16 89.0 89 49.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-15 87.4 121 40.5
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.4e-14 83.2 62 59.7
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 7.6e-14 82.0 95 43.2
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.2e-13 80.5 108 38.9
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.9e-13 80.1 83 44.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.2e-12 76.6 66 50.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-12 75.9 88 43.2
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.3e-12 75.1 107 41.1
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 5.6e-09 65.9 75 42.7
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 1.2e-06 58.2 213 26.3
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 3.4e-06 56.6 76 42.1
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 4.5e-06 56.2 76 42.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.5e-06 56.2 99 34.3


User provided reference genes

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