Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2493.4 1274 100.0
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2390.9 1274 94.0
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2361.6 1274 93.3
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2291.5 1274 91.4
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2240.7 1274 87.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2239.2 1275 87.4
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2211.4 1274 86.4
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2180.6 1274 85.5
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2164.0 1275 84.1
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2152.5 1301 82.6
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2087.8 1273 82.1
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2031.9 1177 85.7
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1969.1 1277 77.3
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1960.7 1274 77.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1951.4 1273 76.8
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1949.9 1275 76.0
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1274 76.4
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1949.1 1272 76.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1947.9 1275 76.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1942.5 1272 76.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1941.4 1273 76.0
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1941.0 1273 76.3
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1941.0 1275 76.2
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1938.3 1275 75.7
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1934.1 1273 75.6
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1933.3 1273 76.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1928.7 1273 75.6
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1924.8 1273 75.2
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1923.7 1274 75.2
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1922.1 1273 75.1
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1920.2 1289 74.6
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1918.3 1272 75.3
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1272 74.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1273 74.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1914.8 1272 74.4
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1913.7 1273 74.7
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1911.3 1275 74.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1909.8 1273 74.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1909.0 1316 73.3
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1907.5 1273 74.5
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1901.7 1274 74.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1891.3 1272 74.2
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1886.7 1274 73.2
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1881.7 1256 75.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1872.4 1268 73.8
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1866.3 1280 72.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1864.4 1279 73.1
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1533 64.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1862.8 1277 73.0
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1859.3 1341 70.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1276 73.0
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1296 71.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1851.3 1276 72.6
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1843.6 1278 72.3
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1842.4 1278 71.8
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1842.0 1278 71.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1840.1 1278 71.6
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1838.2 1276 71.3
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1836.6 1280 71.6
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1835.8 1279 71.5
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1284 71.3
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1834.7 1276 71.2
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1833.9 1273 72.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1833.2 1277 71.7
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1832.8 1277 71.6
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1276 71.0
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1828.9 1272 73.0
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1828.1 1278 71.5
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1278 71.7
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1822.0 1278 71.4
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1818.5 1301 70.1
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1816.6 1281 71.4
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1815.0 1275 71.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1814.7 1272 71.5
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1806.2 1277 70.2
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1803.9 1275 70.9
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1801.6 1287 69.7
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1801.2 1283 70.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1800.8 1274 70.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1799.3 1275 70.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1798.1 1275 70.5
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1796.2 1274 70.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1794.6 1259 71.3
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1793.9 1022 87.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1792.7 1274 70.9
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1792.3 1276 70.5
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1782.3 1185 74.9
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1742.2 1259 69.2
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1727.6 1286 68.8
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1718.4 1273 66.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1716.0 1338 65.6
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1711.0 1254 68.8
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1657.5 1269 65.6
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1558.9 1049 74.8
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1557.7 1246 63.7
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1555.0 1086 71.6
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1548.9 1111 69.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1543.1 1277 61.9
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1498.4 1067 71.0
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1479.9 1050 71.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1473.0 1069 69.3
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1399.4 1113 65.6
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1375.5 1021 68.1
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1357.0 939 73.2
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1342.8 856 77.7
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1269.2 1392 49.6
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1167.1 1359 47.3
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1152.9 1279 51.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1109.7 790 70.0
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1107.8 746 73.1
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.7e-303 1045.8 881 66.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 1.6e-295 1020.0 881 60.7
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.3e-286 990.3 1027 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.6e-282 976.1 1184 46.2
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 2.9e-257 892.9 592 76.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-246 857.4 446 96.4
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.6e-245 853.2 538 77.9
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.4e-195 688.0 1444 33.3
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 5.2e-174 616.3 468 65.4
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.0e-153 547.4 306 86.6
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-149 535.0 489 57.1
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.0e-116 426.0 316 66.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.1e-102 377.5 230 86.1
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.2e-98 365.9 205 86.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 6.1e-98 363.6 226 84.5
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.8e-96 356.3 320 62.5
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.3e-92 345.1 372 49.2
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-86 325.1 194 79.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.8e-81 308.9 255 60.4
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.1e-78 297.7 172 84.3
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.7e-74 284.3 159 89.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.9e-71 275.0 262 52.7
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 7.1e-70 270.4 152 84.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.2e-69 269.6 194 65.5
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 7.8e-69 266.9 257 53.7
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 7.8e-69 266.9 257 53.7
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 7.8e-69 266.9 257 53.7
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-61 243.0 465 34.0
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.3e-60 239.6 197 61.4
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 9.0e-57 226.9 151 68.9
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.4e-54 217.6 145 73.1
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.4e-48 198.4 138 69.6
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-47 196.4 132 65.9
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 3.5e-45 188.3 102 93.1
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.3e-43 181.8 121 74.4
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.4e-43 180.6 107 76.6
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.1e-42 179.1 143 62.2
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.8e-41 176.0 107 74.8
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 2.6e-40 172.2 131 64.9
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.5e-40 171.4 107 72.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.5e-40 171.4 107 72.9
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.9e-39 167.9 106 72.6
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 6.5e-39 167.5 168 51.2
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-38 166.8 98 84.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-35 156.0 98 76.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 7.4e-35 154.1 111 70.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.4e-32 145.2 81 79.0
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 9.3e-30 137.1 65 93.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.6e-29 136.3 87 74.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.8e-25 122.9 123 56.9
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.8e-25 122.9 87 65.5
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.1e-25 121.7 89 74.2
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.3e-20 105.9 62 79.0
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.1e-19 103.6 107 44.9
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 4.8e-18 98.2 125 47.2
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 1.2e-16 93.6 81 59.3
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.2e-16 93.6 57 75.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.9e-16 91.3 52 76.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.2e-15 89.4 572 22.9
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 2.7e-13 82.4 99 46.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.4e-12 80.1 388 21.9
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 9.7e-11 73.9 69 50.7
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.4e-09 69.3 45 75.6
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.1e-09 67.4 52 65.4


User provided reference genes

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