Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g239280 Pisum sativum HOM05D002450 ORTHO05D002953 3.2e-78 295.0 153 100.0
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 2.1e-61 239.2 136 92.6
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 5.3e-57 224.6 136 86.8
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 2.5e-54 215.7 136 83.8
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 3.2e-54 215.3 136 83.1
Psat2g110520 Pisum sativum HOM05D002450 ORTHO05D002953 8.8e-52 207.2 136 82.4
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.5e-51 206.5 136 80.9
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 5.7e-51 204.5 136 80.9
Medtr3g102940 Medicago truncatula HOM05D002450 ORTHO05D002953 3.7e-50 201.8 137 79.6
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 5.9e-48 194.5 114 89.5
Medtr3g102950 Medicago truncatula HOM05D002450 ORTHO05D002953 1.4e-44 183.3 157 66.2
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 4.4e-43 178.3 141 70.2
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 7.5e-43 177.6 141 69.5
Medtr3g102910 Medicago truncatula HOM05D002450 ORTHO05D002953 2.3e-39 166.0 144 61.1
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 8.0e-37 157.5 143 62.2
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 7.8e-32 141.0 147 57.8
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 1.3e-31 140.2 147 57.8
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 3.9e-31 138.7 142 57.7
Psat4g077840 Pisum sativum HOM05D002450 ORTHO05D002953 3.9e-31 138.7 136 59.6
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 4.7e-29 131.7 142 57.0
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 6.8e-28 127.9 145 53.8
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 3.7e-26 122.1 140 55.0
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 3.7e-26 122.1 140 54.3
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 1.1e-25 120.6 140 55.7
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 1.1e-22 110.5 140 52.1
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 1.8e-20 103.2 150 40.7
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 2.6e-19 99.4 118 54.2
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 3.4e-19 99.0 141 42.6
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 5.8e-19 98.2 150 39.3
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 1.3e-18 97.1 150 38.7
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 1.4e-17 93.6 146 40.4
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 9.2e-17 90.9 146 39.7
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 1.2e-16 90.5 144 42.4
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 2.1e-16 89.7 150 38.0
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 2.1e-16 89.7 162 38.9
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 3.5e-16 89.0 151 38.4
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.3e-15 87.0 146 39.7
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.3e-15 86.3 146 39.0
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 5.1e-15 85.1 146 39.0
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.1e-14 84.0 142 38.0
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.9e-14 83.2 142 37.3
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 5.6e-14 81.6 142 36.6
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 5.6e-14 81.6 127 42.5
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 1.2e-13 80.5 146 38.4
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 1.2e-13 80.5 144 38.2
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 2.1e-13 79.7 148 37.2
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 3.6e-13 79.0 140 35.7
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 8.1e-13 77.8 140 40.0
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 1.4e-12 77.0 145 36.6
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.4e-12 77.0 144 37.5
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 6.8e-12 74.7 169 33.1
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 2.0e-11 73.2 144 36.8
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.0e-11 73.2 144 36.8
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 7.6e-11 71.2 140 35.0
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 9.9e-11 70.9 132 38.6
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 9.9e-11 70.9 144 36.1
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 9.9e-11 70.9 132 39.4
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 9.9e-11 70.9 132 34.8
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.7e-10 70.1 144 33.3
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.2e-10 69.7 144 36.1
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 2.2e-10 69.7 133 38.3
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 2.9e-10 69.3 132 41.7
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.1e-09 67.4 164 32.9
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.9e-09 66.6 152 35.5
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 1.9e-09 66.6 162 32.1
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.9e-09 66.6 136 35.3
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 5.4e-09 65.1 131 35.9
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.2e-08 63.9 136 33.1
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 1.2e-08 63.9 136 34.6
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.6e-08 63.5 136 36.8
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 4.6e-08 62.0 142 35.2
arahy.Tifrunner.gnm1.ann1.KMS93W Arachis hypogaea HOM05D002450 ORTHO05D086579 7.8e-08 61.2 60 53.3
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 3.9e-07 58.9 127 31.5
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 3.9e-07 58.9 147 33.3
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 6.6e-07 58.2 129 35.7
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.1e-06 57.4 136 33.1
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 9.6e-06 54.3 152 28.9


User provided reference genes

Program Settings