Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 6.7e-284 979.9 471 100.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.9e-263 911.4 472 92.6
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 7.4e-259 896.7 468 90.8
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.2e-246 853.6 474 87.1
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.7e-242 842.4 480 85.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.7e-242 842.4 479 84.6
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.8e-239 831.2 479 83.5
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.5e-239 830.5 477 84.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.7e-234 815.8 479 83.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 3.5e-216 755.0 478 76.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.3e-212 742.3 481 77.1
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.3e-212 742.3 480 75.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.2e-211 740.0 482 73.2
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.8e-211 737.6 477 75.1
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 3.7e-210 734.9 482 76.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 4.1e-209 731.5 478 74.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 7.1e-209 730.7 474 74.7
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-207 726.5 480 75.0
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.0e-207 725.3 481 73.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.9e-207 724.9 480 74.4
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 6.6e-207 724.2 481 73.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.1e-206 723.4 480 74.8
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.3e-206 721.5 479 73.1
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 7.3e-206 720.7 484 73.6
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.5e-206 720.3 481 72.6
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.2e-205 719.9 476 73.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.1e-204 716.8 483 72.9
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.4e-204 716.5 479 72.9
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.4e-204 716.5 486 71.8
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.4e-204 716.5 476 73.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.8e-204 716.1 474 72.4
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.4e-204 715.7 480 73.1
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.6e-203 712.2 479 73.1
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 4.4e-203 711.4 480 72.1
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.8e-203 711.1 481 71.5
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 7.6e-203 710.7 477 72.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-202 708.8 471 72.0
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.9e-202 708.8 478 74.3
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.6e-200 703.0 481 73.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.8e-200 700.7 493 70.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-199 699.9 481 73.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 8.7e-199 697.2 488 70.1
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.9e-198 696.0 482 71.0
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.9e-198 696.0 478 70.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 3.3e-198 695.3 494 71.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 7.3e-198 694.1 477 68.6
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 9.6e-198 693.7 477 71.1
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 9.6e-198 693.7 502 68.1
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 9.6e-198 693.7 488 69.9
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.6e-197 691.8 474 69.6
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 6.2e-197 691.0 474 70.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 8.1e-197 690.6 483 70.2
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.4e-196 689.9 480 70.2
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.6e-195 685.6 477 69.2
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 9.9e-195 683.7 485 68.9
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.9e-194 682.2 485 69.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.4e-193 679.1 477 69.2
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 3.2e-193 678.7 522 64.2
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.2e-192 676.8 520 67.7
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.6e-192 676.4 520 65.2
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.1e-192 676.0 530 65.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 3.5e-192 675.2 520 64.6
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 4.6e-192 674.9 520 64.6
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.7e-191 672.9 478 69.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.6e-191 671.0 518 67.4
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.3e-189 666.8 488 67.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.3e-189 666.8 520 63.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.1e-189 666.0 513 67.4
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.6e-189 665.2 503 66.4
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 6.9e-188 661.0 545 61.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.3e-186 656.8 520 63.7
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.9e-186 654.8 541 61.4
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 8.4e-186 654.1 474 67.3
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.6e-184 649.8 499 65.3
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.1e-184 649.4 437 71.4
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.3e-183 646.0 478 65.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.7e-183 644.4 484 67.4
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 2.5e-182 642.5 484 66.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.3e-182 642.1 440 70.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.3e-182 642.1 484 66.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.3e-182 641.7 485 66.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-181 639.4 483 64.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 6.2e-181 637.9 473 65.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.1e-180 637.1 480 66.5
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.4e-180 636.0 483 65.8
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-179 632.9 479 66.6
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.7e-178 629.8 478 66.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.2e-178 629.4 483 65.2
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.9e-178 628.2 478 64.9
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 6.4e-178 627.9 437 68.6
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.1e-177 627.1 473 64.9
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.5e-177 624.8 438 70.1
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.9e-176 620.9 474 63.7
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 6.7e-175 617.8 480 65.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.1e-174 617.1 474 63.5
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-174 616.7 492 62.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.3e-174 615.5 474 63.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 9.6e-174 614.0 474 62.9
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 9.6e-174 614.0 474 62.9
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.1e-173 612.8 484 63.6
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 6.9e-172 607.8 479 63.7
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-171 607.1 475 62.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.0e-171 606.3 480 63.1
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.5e-171 605.1 474 62.4
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 5.8e-171 604.7 480 61.7
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.9e-170 602.4 479 62.8
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.9e-170 602.4 479 62.8
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 3.8e-170 602.1 478 63.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-168 596.3 479 62.4
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.6e-168 595.1 478 62.6
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.2e-165 586.3 394 72.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 8.5e-162 574.3 391 71.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.7e-160 569.3 395 71.4
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.7e-160 569.3 406 70.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 3.3e-158 562.4 400 67.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.7e-158 561.6 391 70.8
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.8e-157 559.3 436 64.9
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 5.9e-155 551.6 497 55.9
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.2e-153 545.8 492 55.3
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.4e-151 540.4 290 84.5
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.2e-149 533.1 444 63.5
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 4.5e-147 525.4 441 62.4
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.5e-146 521.2 511 53.2
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.9e-145 520.0 358 73.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.5e-145 518.5 458 60.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 2.2e-141 506.5 282 79.8
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 2.8e-141 506.1 431 57.5
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 7.7e-139 498.0 477 54.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.0e-138 497.7 456 55.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.9e-138 496.1 409 63.3
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.2e-137 492.7 287 77.7
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-131 473.8 306 68.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.2e-126 457.6 300 69.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.2e-117 426.8 396 54.0
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 4.9e-117 425.6 286 68.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 8.0e-112 408.3 312 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.3e-111 406.8 527 43.6
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 2.5e-105 386.7 304 59.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 7.3e-105 385.2 470 43.2
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.6e-102 376.7 299 66.6
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.5e-97 360.9 416 44.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.8e-87 327.4 364 49.2
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.8e-85 319.7 300 60.0
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 5.8e-70 269.2 205 62.9
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 7.6e-70 268.9 430 41.6
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.1e-55 220.3 179 61.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-53 214.2 191 61.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.5e-44 183.0 190 57.4
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.6e-43 179.9 144 63.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.8e-42 177.9 95 83.2
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.5e-41 174.9 93 82.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-40 171.8 144 56.9
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-40 171.8 144 56.9
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-40 171.0 95 78.9
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 8.2e-40 169.1 109 75.2
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.5e-38 164.9 190 47.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.2e-36 156.8 127 52.0
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.6e-35 154.8 120 68.3
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.1e-35 154.5 86 82.6
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.1e-35 154.5 86 82.6
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-30 137.9 173 45.1
Psat5g113520 Pisum sativum HOM05D004150 ORTHO05D329029 4.2e-28 130.2 91 74.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.9e-26 123.6 137 50.4
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-25 121.3 155 47.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 4.8e-24 116.7 182 42.9
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.9e-20 104.8 66 77.3
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 5.0e-13 80.1 45 77.8
VMungo1309G0651 Vigna mungo HOM05D004150 ORTHO05D435762 1.1e-12 79.0 59 64.4


User provided reference genes

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