Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 1.8e-143 512.7 274 100.0
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 3.9e-119 431.8 274 81.4
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 5.2e-119 431.4 269 81.8
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 8.5e-114 414.1 269 77.3
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.6e-112 409.8 269 77.3
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 3.6e-112 408.7 271 76.0
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 4.0e-111 405.2 269 77.3
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.7e-109 399.8 265 76.6
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 3.1e-108 395.6 268 73.5
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.3e-106 390.2 424 54.7
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 2.9e-106 389.0 263 77.2
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.5e-105 386.7 268 73.9
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.0e-103 380.6 258 73.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.0e-103 380.6 269 73.2
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.8e-103 379.8 261 73.9
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 3.0e-103 379.0 256 75.4
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.0e-103 378.6 257 75.5
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 6.8e-103 377.9 271 70.5
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 6.8e-103 377.9 256 74.6
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 6.8e-103 377.9 256 74.6
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 6.8e-103 377.9 273 71.1
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 8.8e-103 377.5 262 73.7
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 2.6e-102 375.9 265 72.1
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.6e-102 375.9 260 75.0
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 3.4e-102 375.6 265 73.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 4.4e-102 375.2 262 73.3
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 5.7e-102 374.8 260 74.6
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 5.7e-102 374.8 265 72.5
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 7.5e-102 374.4 264 72.3
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.3e-101 373.6 260 74.6
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.3e-101 373.6 266 72.2
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-101 372.9 262 72.9
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.2e-101 372.9 263 72.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 2.8e-101 372.5 267 73.4
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 3.7e-101 372.1 258 72.1
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 6.3e-101 371.3 261 72.0
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.3e-101 371.3 262 72.1
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.4e-100 370.2 257 73.9
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 2.4e-100 369.4 259 71.4
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.4e-100 369.4 262 71.8
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 3.1e-100 369.0 256 72.3
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 5.4e-100 368.2 262 70.2
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 5.4e-100 368.2 257 73.9
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 7.0e-100 367.9 257 73.9
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 9.1e-100 367.5 262 71.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.2e-99 367.1 271 71.2
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 1.2e-99 367.1 265 71.7
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 1.6e-99 366.7 253 73.1
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.0e-99 366.3 257 72.8
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 2.7e-99 365.9 264 72.0
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 3.5e-99 365.5 258 71.3
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 3.5e-99 365.5 259 72.2
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 5.9e-99 364.8 250 75.6
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 5.9e-99 364.8 252 73.0
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 7.7e-99 364.4 264 70.5
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 7.7e-99 364.4 279 70.3
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 1.0e-98 364.0 266 71.1
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.0e-98 364.0 256 72.3
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 1.0e-98 364.0 253 72.7
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 1.7e-98 363.2 266 70.7
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 2.3e-98 362.8 257 73.2
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 2.9e-98 362.5 266 70.3
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 2.9e-98 362.5 270 70.0
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 2.9e-98 362.5 270 70.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 5.0e-98 361.7 253 73.5
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 5.0e-98 361.7 260 73.1
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 5.0e-98 361.7 265 69.8
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 5.0e-98 361.7 265 70.6
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 6.5e-98 361.3 251 75.7
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 6.5e-98 361.3 269 69.1
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.5e-98 361.3 257 71.6
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 6.5e-98 361.3 256 71.9
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 8.6e-98 360.9 252 73.0
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-97 360.5 256 71.9
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.5e-97 360.1 264 72.7
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.9e-97 359.8 258 70.5
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 3.2e-97 359.0 269 68.4
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 4.2e-97 358.6 269 68.8
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 7.2e-97 357.8 269 68.4
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 7.2e-97 357.8 249 71.5
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.2e-96 357.1 270 68.1
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 2.8e-96 355.9 251 72.1
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 4.7e-96 355.1 263 71.5
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 6.1e-96 354.8 257 72.0
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 3.0e-95 352.4 279 66.3
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.2e-93 346.3 295 62.4
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 8.3e-93 344.4 329 57.1
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 9.2e-92 340.9 253 68.8
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 2.9e-90 335.9 262 66.0
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 2.5e-89 332.8 276 65.9
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 4.3e-89 332.0 257 68.1
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 5.6e-89 331.6 312 58.0
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.2e-88 330.5 244 69.3
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 2.1e-88 329.7 261 64.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 7.5e-86 321.2 228 70.2
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.7e-85 320.1 226 70.8
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.7e-85 320.1 226 70.8
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 3.2e-84 315.8 233 69.5
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 5.9e-83 311.6 252 61.1
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 5.0e-82 308.5 237 67.9
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 9.5e-81 304.3 251 61.8
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 4.9e-77 292.0 192 78.1
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 1.1e-76 290.8 203 72.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.4e-76 290.4 245 60.0
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 3.2e-76 289.3 195 74.4
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 4.6e-75 285.4 199 73.9
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 6.0e-75 285.0 204 72.5
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 9.5e-73 277.7 242 59.1
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 4.7e-72 275.4 244 57.8
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.8e-71 273.5 247 55.9
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 6.8e-71 271.6 199 71.9
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 8.3e-69 264.6 233 60.9
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 8.3e-69 264.6 307 48.9
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.4e-68 263.8 263 53.6
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 2.3e-66 256.5 178 71.9
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.6e-54 216.5 147 75.5
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 1.7e-53 213.8 236 51.3
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 5.4e-52 208.8 237 48.5
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 2.7e-51 206.5 203 60.1
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 2.5e-49 199.9 162 64.2
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.6e-49 198.7 153 66.7
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 2.9e-45 186.4 262 42.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.4e-44 183.3 160 61.9
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.4e-44 182.2 255 42.4
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 8.7e-26 121.7 87 74.7
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 2.3e-18 97.1 73 65.8
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 2.8e-16 90.1 67 67.2
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 1.1e-15 88.2 71 62.0
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 1.0e-13 81.6 57 73.7
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 2.2e-13 80.5 67 62.7
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 1.2e-11 74.7 63 57.1
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 2.4e-07 60.5 42 73.8
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 2.0e-06 57.4 169 32.0


User provided reference genes

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