Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.2e-120 435.3 245 100.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.5e-72 275.0 256 68.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.0e-70 268.9 264 65.2
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.7e-68 262.3 258 65.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 8.8e-54 214.5 239 58.6
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.0e-49 201.1 253 56.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.8e-46 190.3 248 52.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.7e-41 173.7 251 49.4
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.6e-39 167.2 265 51.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.8e-39 166.4 250 50.8
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-38 164.1 248 50.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.1e-38 162.9 281 47.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.2e-28 130.2 141 53.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.9e-28 129.0 136 55.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 9.2e-27 124.8 141 51.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 9.2e-27 124.8 135 54.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.2e-27 124.8 128 56.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.2e-26 124.4 123 59.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.1e-26 123.6 146 52.1
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 6.0e-26 122.1 137 52.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-25 120.9 143 53.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-25 120.6 149 51.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.3e-25 120.2 140 55.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 3.0e-25 119.8 113 59.3
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.0e-25 119.8 153 52.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.9e-25 119.4 142 52.1
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.1e-25 119.0 117 58.1
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 5.1e-25 119.0 138 51.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 6.6e-25 118.6 141 52.5
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 6.6e-25 118.6 151 47.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 6.6e-25 118.6 137 52.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.1e-24 117.9 280 35.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.1e-24 117.9 137 53.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.1e-24 117.9 124 54.8
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 5.6e-24 115.5 135 49.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 5.6e-24 115.5 135 49.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 7.3e-24 115.2 138 50.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.3e-24 115.2 135 51.1
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-23 114.4 113 57.5
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.6e-23 114.0 259 37.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.6e-23 114.0 273 34.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.1e-23 113.6 305 34.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.8e-23 113.2 306 33.7
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.8e-23 113.2 306 33.7
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.8e-23 113.2 137 51.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.8e-23 113.2 153 49.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.8e-23 113.2 154 48.1
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.6e-23 112.8 164 45.7
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.6e-23 112.8 164 47.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.7e-23 112.5 111 57.7
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.7e-23 112.5 167 46.1
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.2e-23 112.1 126 54.0
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 6.2e-23 112.1 111 55.0
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 8.1e-23 111.7 111 57.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 8.1e-23 111.7 131 51.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-22 111.3 126 51.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-22 111.3 154 48.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.4e-22 110.9 185 41.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.4e-22 110.9 305 33.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.4e-22 110.9 141 48.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.8e-22 110.5 114 53.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.4e-22 110.2 297 31.3
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-22 110.2 306 34.3
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.4e-22 110.2 124 54.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.1e-22 109.8 125 52.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 4.0e-22 109.4 177 41.2
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.0e-22 109.4 150 47.3
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.0e-22 109.4 305 33.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.0e-22 109.4 154 48.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.2e-22 109.0 287 33.4
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.2e-22 109.0 139 48.2
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 8.9e-22 108.2 126 52.4
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.5e-21 107.5 273 34.1
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-21 107.5 241 39.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.5e-21 107.5 196 40.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-21 107.5 111 52.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.0e-21 107.1 161 41.6
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.6e-21 106.7 137 48.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 3.4e-21 106.3 291 33.3
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.4e-21 106.3 289 32.5
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.4e-21 106.3 160 46.2
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.4e-21 106.3 126 51.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.4e-21 105.9 274 32.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.8e-21 105.5 143 46.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.8e-21 105.5 201 36.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.8e-21 105.5 279 34.8
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 7.6e-21 105.1 151 44.4
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.7e-20 104.0 118 51.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.2e-20 103.6 241 41.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.2e-20 103.6 144 45.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.9e-20 103.2 134 46.3
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.9e-20 103.2 146 45.9
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.9e-20 103.2 146 45.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.8e-20 102.8 125 50.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.8e-20 102.8 117 50.4
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.8e-20 102.8 282 32.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.4e-20 102.1 111 52.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.4e-20 101.7 281 32.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.9e-19 100.5 102 51.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.4e-19 100.1 102 51.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.2e-19 99.8 111 49.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.1e-19 99.4 105 51.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 5.4e-19 99.0 135 43.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 5.4e-19 99.0 124 48.4
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 5.4e-19 99.0 124 48.4
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 5.4e-19 99.0 144 43.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.4e-19 99.0 284 28.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 7.1e-19 98.6 124 48.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.1e-19 98.6 133 43.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.2e-18 97.8 126 44.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-18 97.8 113 48.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.6e-18 97.4 136 43.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.6e-18 97.4 249 32.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.1e-18 97.1 197 36.5
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-18 96.3 116 47.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.5e-18 96.3 114 47.4
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 4.6e-18 95.9 111 49.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.0e-18 95.5 73 67.1
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-17 94.7 157 40.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.0e-17 94.7 157 40.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-17 94.4 255 33.7
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.7e-17 94.0 294 29.3
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-17 94.0 262 33.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.7e-17 94.0 120 50.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.9e-17 92.8 155 38.1
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.9e-17 92.8 274 32.1
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 6.6e-17 92.0 295 29.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.7e-17 91.7 192 34.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 8.7e-17 91.7 142 43.7
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.7e-17 91.7 108 49.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.5e-16 90.9 271 33.2
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.3e-16 89.7 268 32.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 4.3e-16 89.4 133 45.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.3e-16 89.4 73 63.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.6e-16 89.0 116 46.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.1e-15 87.0 87 54.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.8e-15 86.7 266 33.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-15 86.7 118 50.0
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.8e-15 86.7 118 50.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.6e-15 86.3 264 32.2
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 8.1e-15 85.1 145 45.5
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-14 84.7 246 31.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.4e-14 84.3 261 33.7
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-14 84.3 145 45.5
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-14 84.3 145 45.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-14 84.0 142 44.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.4e-14 83.6 175 37.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 9.0e-14 81.6 274 30.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 9.0e-14 81.6 274 30.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 9.0e-14 81.6 274 30.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.4e-13 79.7 109 39.4
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.2e-12 77.0 96 45.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 8.4e-12 75.1 98 43.9
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.1e-11 74.7 220 30.5
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-11 74.3 102 49.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.6e-10 70.9 127 37.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.1e-10 70.5 121 46.3
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 3.5e-10 69.7 112 42.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.6e-10 69.3 103 42.7
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.7e-09 67.4 85 42.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.3e-08 63.2 245 25.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.6e-07 60.8 83 48.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.6e-07 60.8 83 48.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 3.6e-07 59.7 88 38.6
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-06 57.4 247 23.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.9e-06 55.5 43 67.4


User provided reference genes

Program Settings