Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.8e-81 305.8 154 100.0
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 4.5e-72 274.6 152 90.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 8.5e-71 270.4 152 86.8
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.0e-68 263.5 152 84.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.3e-66 254.2 149 83.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.1e-65 253.4 149 81.9
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.1e-65 253.4 152 78.9
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 3.3e-62 241.9 149 79.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.1e-61 239.2 149 79.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.0e-60 235.3 154 77.3
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 4.4e-59 231.5 149 77.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.6e-56 221.5 149 74.5
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.5e-54 215.7 149 73.8
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.8e-53 212.2 149 68.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.1e-52 208.8 147 67.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.1e-52 208.8 147 67.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.1e-52 208.8 147 67.3
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 4.0e-52 208.4 147 68.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 5.2e-52 208.0 146 67.8
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 6.8e-52 207.6 146 67.8
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.5e-51 206.5 146 67.1
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.4e-51 205.3 149 66.4
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 9.8e-51 203.8 149 67.8
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-50 203.4 149 71.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.3e-50 203.4 150 67.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.7e-50 203.0 149 63.8
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.2e-50 202.6 148 64.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.7e-50 201.8 147 66.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.4e-50 201.1 149 64.4
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 6.4e-50 201.1 149 65.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.4e-50 201.1 149 65.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 8.3e-50 200.7 148 63.5
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.3e-50 200.7 147 63.9
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.3e-50 200.7 150 64.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 1.1e-49 200.3 149 66.4
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 65.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.1e-49 200.3 148 64.2
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.9e-49 199.5 147 63.9
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 66.4
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 63.9
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.2e-49 198.7 149 63.8
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 3.2e-49 198.7 149 66.4
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.1e-49 198.4 149 61.1
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-49 198.4 147 63.9
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 4.1e-49 198.4 147 63.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.1e-49 198.4 147 64.6
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.1e-49 198.4 149 66.4
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 5.4e-49 198.0 147 63.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 9.2e-49 197.2 147 63.9
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.2e-48 196.8 150 64.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 60.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 62.4
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 63.1
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.6e-48 196.4 146 63.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.0e-48 196.1 150 62.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.7e-48 195.7 149 63.8
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.5e-48 195.3 149 60.4
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.5e-48 195.3 146 66.4
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.5e-48 195.3 146 65.8
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.5e-48 195.3 149 64.4
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-48 194.9 149 60.4
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.0e-48 194.5 147 61.9
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.0e-48 194.5 149 61.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 59.7
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.3e-47 193.4 149 60.4
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-47 193.0 151 60.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.3e-47 192.6 147 63.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.0e-47 192.2 149 63.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.0e-47 191.4 149 59.1
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 8.6e-47 190.7 149 61.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 8.6e-47 190.7 133 66.2
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 8.6e-47 190.7 154 59.1
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 145 62.1
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.1e-46 190.3 142 63.4
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 142 63.4
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-46 190.3 142 63.4
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.5e-46 189.9 149 63.1
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.5e-46 189.9 149 61.7
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.5e-46 189.9 149 63.1
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-46 189.5 144 62.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.9e-46 189.5 144 62.5
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 61.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.5e-46 189.1 159 59.1
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-46 189.1 142 62.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.3e-46 188.7 142 62.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.3e-46 188.3 149 62.4
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 4.3e-46 188.3 156 57.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 7.3e-46 187.6 149 62.4
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 7.3e-46 187.6 149 62.4
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 7.3e-46 187.6 149 62.4
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 9.5e-46 187.2 150 59.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 61.1
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 63.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 62.6
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 60.4
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-45 186.0 149 60.4
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.8e-45 185.7 159 56.0
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 2.8e-45 185.7 181 54.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.6e-45 185.3 147 62.6
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.6e-45 185.3 149 60.4
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 4.7e-45 184.9 151 58.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 8.1e-45 184.1 160 55.6
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-44 183.0 149 57.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.8e-44 183.0 149 60.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 6.8e-44 181.0 146 59.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 5.8e-43 177.9 149 59.1
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 9.8e-43 177.2 149 57.0
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 9.8e-43 177.2 149 61.7
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.3e-42 176.8 151 56.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-42 176.4 147 59.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.2e-42 176.0 156 55.1
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.9e-42 175.6 151 57.0
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.9e-42 174.9 160 54.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.3e-42 174.1 143 59.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 9.2e-41 170.6 147 56.5
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.6e-40 169.9 133 66.2
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.6e-40 169.9 133 66.2
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 2.7e-40 169.1 143 58.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.5e-40 168.7 167 56.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 6.0e-40 167.9 149 62.4
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.8e-40 167.5 141 56.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.7e-39 166.4 143 55.9
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.3e-39 166.0 151 55.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.0e-39 165.6 143 54.5
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.6e-39 164.1 143 53.1
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 8.6e-39 164.1 139 55.4
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.5e-38 163.3 147 59.9
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.9e-38 162.9 149 51.0
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.3e-38 162.2 143 53.1
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 7.3e-38 161.0 149 50.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.3e-38 161.0 147 53.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.2e-37 160.2 221 42.1
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 52.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 52.1
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 52.1
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 52.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.8e-37 159.1 148 54.7
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.7e-37 158.3 145 56.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-36 157.1 143 51.7
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.5e-35 153.3 192 45.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.6e-35 152.5 149 49.7
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.3e-34 150.2 82 90.2
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.3e-34 150.2 139 51.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.4e-33 146.7 145 53.8
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 7.8e-32 141.0 150 50.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 6.2e-29 131.3 89 69.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 8.1e-29 131.0 146 49.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 8.1e-29 131.0 99 61.6
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.1e-28 130.6 150 45.3
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.4e-28 129.4 89 65.2
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 4.0e-28 128.6 105 60.0
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 4.0e-28 128.6 105 60.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 7.6e-27 124.4 89 64.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.7e-26 123.2 106 54.7
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 4.9e-26 121.7 145 47.6
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.2e-25 119.0 89 64.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.2e-24 117.1 132 47.7
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.6e-22 108.2 142 39.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.1e-20 104.0 86 53.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.1e-20 102.4 103 45.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 4.0e-20 102.1 73 69.9
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 4.4e-19 98.6 87 58.6
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.3e-18 97.1 88 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 5.1e-15 85.1 137 30.7
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.6e-15 84.7 132 31.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.8e-12 76.6 143 29.4
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 5.3e-12 75.1 46 67.4
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.0e-11 73.2 104 31.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 4.9e-10 68.6 136 27.2
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-09 65.5 44 61.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.5e-09 65.1 79 41.8
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 5.5e-09 65.1 101 38.6


User provided reference genes

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