Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g230280 Pisum sativum HOM05D002103 ORTHO05D007890 3.5e-92 341.7 177 100.0
Medtr3g006810 Medicago truncatula HOM05D002103 ORTHO05D007890 6.8e-80 300.8 175 85.7
Ca_14028_v3 Cicer arietinum L. HOM05D002103 ORTHO05D007890 4.4e-79 298.1 172 86.0
Medtr6g003930 Medicago truncatula HOM05D002103 ORTHO05D007890 9.8e-79 297.0 175 84.6
Lj3g0001779 Lotus japonicus HOM05D002103 ORTHO05D007890 8.0e-73 277.3 176 81.8
Glyma.11G102400 Glycine max HOM05D002103 ORTHO05D007890 4.9e-70 268.1 175 77.1
TPR.G32346 Trifolium pratense HOM05D002103 ORTHO05D007890 4.9e-70 268.1 178 78.1
VMungo1127G1488 Vigna mungo HOM05D002103 ORTHO05D007890 6.4e-70 267.7 175 77.7
arahy.Tifrunner.gnm1.ann1.7RGS7A Arachis hypogaea HOM05D002103 ORTHO05D007890 4.1e-69 265.0 175 76.6
Phvul.011G031400 Phaseolus vulgaris HOM05D002103 ORTHO05D007890 3.9e-67 258.5 178 75.3
Lalb_Chr23g0267731 Lupinus albus HOM05D002103 ORTHO05D007890 5.2e-64 248.1 168 73.2
Lj1g0021003 Lotus japonicus HOM05D002103 ORTHO05D007890 3.0e-59 232.3 179 69.3
arahy.Tifrunner.gnm1.ann1.MW41KC Arachis hypogaea HOM05D002103 ORTHO05D007890 4.9e-54 214.9 142 76.8
Psat7g173600 Pisum sativum HOM05D002103 ORTHO05D007890 7.1e-53 211.1 177 67.8
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 1.2e-52 210.3 174 59.2
QL02p005396 Quercus lobata HOM05D002103 ORTHO05D007890 2.3e-51 206.1 174 58.0
Atru.chr13.649 Acer truncatum HOM05D002103 ORTHO05D007890 3.0e-51 205.7 167 61.1
Haze_18960 Corylus avellana HOM05D002103 ORTHO05D007890 5.1e-51 204.9 174 59.8
CiPaw.16G045900 Carya illinoinensis HOM05D002103 ORTHO05D007890 1.9e-50 203.0 174 59.8
Prupe.1G438600 Prunus persica HOM05D002103 ORTHO05D007890 2.5e-50 202.6 174 57.5
TWI56G0989 Tripterygium wilfordii HOM05D002103 ORTHO05D007890 9.6e-50 200.7 175 56.0
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 1.2e-49 200.3 174 58.6
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 1.2e-49 200.3 174 58.6
MD15G1084800 Malus domestica HOM05D002103 ORTHO05D007890 4.7e-49 198.4 174 58.0
Thecc.08G011000 Theobroma cacao HOM05D002103 ORTHO05D007890 6.2e-49 198.0 174 58.6
PSO339G5974 Papaver somniferum HOM05D002103 ORTHO05D007890 1.8e-48 196.4 177 56.5
RcHm_v2.0_Chr6g0307451 Rosa chinensis HOM05D002103 ORTHO05D007890 1.8e-48 196.4 174 56.3
Ciclev10003422m.g Citrus clementina HOM05D002103 ORTHO05D007890 3.1e-48 195.7 174 56.3
Medtr4g074580 Medicago truncatula HOM05D002103 ORTHO05D007890 3.1e-48 195.7 133 75.2
Gohir.A03G078312 Gossypium hirsutum HOM05D002103 ORTHO05D007890 5.2e-48 194.9 174 56.9
CSS0029487 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 6.8e-48 194.5 175 57.7
FvH4_2g34630 Fragaria vesca HOM05D002103 ORTHO05D007890 8.9e-48 194.1 174 56.3
Cpa.g.c24415.2 Carica papaya HOM05D002103 ORTHO05D007890 1.2e-47 193.7 174 56.3
COL.COLO4_26477 Corchorus olitorius HOM05D002103 ORTHO05D007890 1.2e-47 193.7 174 56.9
Duzib093G0968 Durio zibethinus HOM05D002103 ORTHO05D007890 4.4e-47 191.8 174 56.3
Hma1.2p1_0982F.1_g243870 Hydrangea macrophylla HOM05D002103 ORTHO05D007890 5.8e-47 191.4 170 57.6
PSO801G0348 Papaver somniferum HOM05D002103 ORTHO05D007890 5.8e-47 191.4 177 55.4
CSS0015524 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D007890 7.6e-47 191.0 175 56.6
Manes.03G089400 Manihot esculenta HOM05D002103 ORTHO05D007890 7.6e-47 191.0 177 53.7
PSO170G0070 Papaver somniferum HOM05D002103 ORTHO05D007890 7.6e-47 191.0 177 55.4
RcHm_v2.0_Chr7g0208301 Rosa chinensis HOM05D002103 ORTHO05D007890 7.6e-47 191.0 173 55.5
Sed0021207 Sechium edule HOM05D002103 ORTHO05D007890 7.6e-47 191.0 166 56.6
TAR628G0377 Trochodendron aralioides HOM05D000369 ORTHO05D007890 7.6e-47 191.0 175 56.0
PSO210G1636 Papaver somniferum HOM05D002103 ORTHO05D007890 9.9e-47 190.7 176 55.7
Gohir.D02G092000 Gossypium hirsutum HOM05D002103 ORTHO05D007890 1.3e-46 190.3 174 55.7
Gorai.005G103400 Gossypium raimondii HOM05D002103 ORTHO05D007890 1.7e-46 189.9 174 55.7
FAN20G2285 Fragaria x ananassa HOM05D002103 ORTHO05D007890 2.2e-46 189.5 174 55.2
Nn5g30226 Nelumbo nucifera HOM05D002103 ORTHO05D007890 2.9e-46 189.1 166 56.6
MSTRG.22267 Avicennia marina HOM05D002103 ORTHO05D007890 3.8e-46 188.7 173 55.5
Potri.014G032000 Populus trichocarpa HOM05D002103 ORTHO05D007890 3.8e-46 188.7 170 55.3
TAR381G1315 Trochodendron aralioides HOM05D002103 ORTHO05D007890 3.8e-46 188.7 175 54.9
MD08G1103500 Malus domestica HOM05D002103 ORTHO05D007890 4.9e-46 188.3 174 54.6
ClCG08G015720 Citrullus lanatus HOM05D002103 ORTHO05D007890 1.4e-45 186.8 166 56.6
Sabra14G0022500 Salix brachista HOM05D002103 ORTHO05D007890 7.1e-45 184.5 170 54.1
CsaV3_2G028050 Cucumis sativus L. HOM05D002103 ORTHO05D007890 7.8e-44 181.0 166 54.8
Aqoxy1G02088 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 1.0e-43 180.6 175 52.6
Dinv39329 Davidia involucrata HOM05D002103 ORTHO05D007890 1.7e-43 179.9 162 57.4
FAN27G2960 Fragaria x ananassa HOM05D002103 ORTHO05D007890 3.0e-43 179.1 163 56.4
Aqoxy1G04301 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 3.9e-43 178.7 174 50.6
MELO3C010884.2 Cucumis melo HOM05D002103 ORTHO05D007890 5.1e-43 178.3 166 54.8
Aqoxy7G04203 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 1.9e-42 176.4 175 50.9
Eucgr.F00241 Eucalyptus grandis HOM05D002103 ORTHO05D007890 1.9e-42 176.4 173 50.3
Carub.0006s2870 Capsella rubella HOM05D002103 ORTHO05D007890 2.5e-42 176.0 174 52.9
Aa31LG9G11870 Aethionema arabicum HOM05D002103 ORTHO05D007890 3.3e-42 175.6 175 52.0
AL6G43940 Arabidopsis lyrata HOM05D002103 ORTHO05D007890 5.6e-42 174.9 172 52.3
Cc10_g04330 Coffea canephora HOM05D002103 ORTHO05D007890 5.6e-42 174.9 174 49.4
Lj3P736T14 Lonicera japonica HOM05D002103 ORTHO05D007890 7.3e-42 174.5 176 50.6
AT4G10130 Arabidopsis thaliana HOM05D002103 ORTHO05D007890 1.6e-41 173.3 171 50.3
Migut.N02701 Erythranthe guttata HOM05D002103 ORTHO05D007890 1.6e-41 173.3 173 51.4
PGR083G1082 Punica granatum HOM05D002103 ORTHO05D007890 1.6e-41 173.3 174 53.4
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 3.6e-41 172.2 174 47.1
Oeu011541.1 Olea europaea HOM05D002103 ORTHO05D007890 8.1e-41 171.0 167 51.5
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 8.1e-41 171.0 166 51.8
Thhalv10029407m.g Eutrema salsugineum HOM05D002103 ORTHO05D007890 1.1e-40 170.6 173 50.9
Lj4C53T13 Lonicera japonica HOM05D002103 ORTHO05D007890 1.1e-40 170.6 176 50.0
CARHR261220 Cardamine hirsuta HOM05D002103 ORTHO05D007890 3.1e-40 169.1 174 51.1
BcaB01g01453 Brassica carinata HOM05D002103 ORTHO05D007890 5.3e-40 168.3 171 50.3
BcaC04g21020 Brassica carinata HOM05D002103 ORTHO05D007890 5.3e-40 168.3 171 49.7
C09p36600 Brassica napus HOM05D002103 ORTHO05D007890 5.3e-40 168.3 171 49.7
BolC9t56492H Brassica oleracea HOM05D002103 ORTHO05D007890 5.3e-40 168.3 171 49.7
Sp6g07290 Schrenkiella parvula HOM05D002103 ORTHO05D007890 5.3e-40 168.3 174 48.9
SpUn0121_0020 Schrenkiella parvula HOM05D002103 ORTHO05D007890 5.3e-40 168.3 174 48.9
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 6.9e-40 167.9 164 53.7
A09p28810 Brassica napus HOM05D002103 ORTHO05D007890 1.2e-39 167.2 171 49.1
BraA09t38443Z Brassica rapa HOM05D002103 ORTHO05D007890 1.2e-39 167.2 171 49.1
EL10Ac3g05247 Beta vulgaris HOM05D002103 ORTHO05D007890 1.5e-39 166.8 166 52.4
ECA247G1332 Erigeron canadensis HOM05D002103 ORTHO05D007890 2.0e-39 166.4 169 51.5
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 2.0e-39 166.4 174 46.6
Sopen12g030780 Solanum pennellii HOM05D002103 ORTHO05D007890 2.6e-39 166.0 174 46.0
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 5.8e-39 164.9 174 45.4
HanXRQChr12g0375061 Helianthus annuus HOM05D002103 ORTHO05D007890 9.9e-39 164.1 168 51.2
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 9.9e-39 164.1 174 45.4
Oeu011560.1 Olea europaea HOM05D002103 ORTHO05D007890 1.3e-38 163.7 167 49.7
THA.LOC104802577 Tarenaya hassleriana HOM05D002103 ORTHO05D007890 1.3e-38 163.7 174 48.9
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.7e-38 163.3 145 58.6
PGSC0003DMG400015418 Solanum tuberosum HOM05D002103 ORTHO05D007890 1.7e-38 163.3 174 45.4
CAN.G1422.7 Capsicum annuum HOM05D002103 ORTHO05D007890 3.8e-38 162.2 174 45.4
BcaB05g23918 Brassica carinata HOM05D002103 ORTHO05D007890 4.9e-38 161.8 178 47.8
Nitab4.5_0004376g0080 Nicotiana tabacum HOM05D002103 ORTHO05D007890 2.4e-37 159.5 174 44.8
unitig_19.g30010 Utricularia gibba HOM05D002103 ORTHO05D007890 9.3e-37 157.5 173 45.7
unitig_8.g5018 Utricularia gibba HOM05D002103 ORTHO05D007890 9.3e-37 157.5 173 45.7
Duzib116G0248 Durio zibethinus HOM05D002103 ORTHO05D007890 1.2e-36 157.1 141 56.7
SGA_v2.0_scaffold168G38534 Striga asiatica HOM05D002103 ORTHO05D007890 1.2e-36 157.1 175 48.6
SGA_v2.0_scaffold62G21581 Striga asiatica HOM05D002103 ORTHO05D007890 1.6e-36 156.8 175 48.6
HanXRQChr02g0037671 Helianthus annuus HOM05D002103 ORTHO05D007890 2.1e-36 156.4 164 50.6
SGA_v2.0_scaffold208G41999 Striga asiatica HOM05D002103 ORTHO05D007890 6.0e-36 154.8 174 49.4
Zm00001eb315040 Zea mays HOM05D002103 ORTHO05D007890 5.1e-35 151.8 174 48.3
Sc19g0008280 Simmondsia chinensis HOM05D002103 ORTHO05D007890 6.6e-35 151.4 147 51.0
HPP92_016731 Vanilla planifolia HOM05D002103 ORTHO05D007890 1.1e-34 150.6 176 48.3
Lsat_1_v5_gn_1_20241 Lactuca sativa HOM05D002103 ORTHO05D007890 1.5e-34 150.2 182 46.2
Os09g0460000 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 3.3e-34 149.1 164 50.6
Os08g0474600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D007890 9.6e-34 147.5 166 47.6
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 1.6e-33 146.7 163 49.7
FAN15G1587 Fragaria x ananassa HOM05D002103 ORTHO05D007890 3.1e-32 142.5 158 50.6
SHI08293 Sapria himalayana HOM05D002103 ORTHO05D007890 3.4e-31 139.0 165 46.1
ATR0605G347 Amborella trichopoda HOM05D002103 ORTHO05D007890 9.9e-31 137.5 179 44.1
CANSAT11G1050 Cannabis sativa HOM05D002103 ORTHO05D007890 7.1e-29 131.3 206 39.3
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 6.0e-28 128.3 147 46.9
arahy.Tifrunner.gnm1.ann1.AI0I01 Arachis hypogaea HOM05D002103 ORTHO05D007890 1.3e-27 127.1 84 76.2
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 2.5e-26 122.9 112 51.8
Pp3c18_17490 Physcomitrium patens HOM05D002103 ORTHO05D007890 3.8e-22 109.0 185 36.2
Mapoly0103s0014 Marchantia polymorpha HOM05D002103 ORTHO05D007890 2.7e-20 102.8 225 34.2
AagrBONN_evm.TU.Sc2ySwM_344.4853 Anthoceros agrestis HOM05D002103 ORTHO05D007890 1.8e-19 100.1 166 39.2
Aqoxy5G01267 Aquilegia oxysepala HOM05D002103 ORTHO05D007890 3.9e-19 99.0 79 58.2
SEGI_04975 Sequoiadendron giganteum HOM05D002103 ORTHO05D007890 3.1e-16 89.4 205 32.7
Glyma.12G141301 Glycine max HOM05D002103 ORTHO05D007890 6.7e-11 71.6 46 76.1
C02p42500 Brassica napus HOM05D002103 ORTHO05D007890 2.5e-10 69.7 71 50.7
CAN.G1335.15 Capsicum annuum HOM05D002103 ORTHO05D007890 5.7e-10 68.6 113 36.3
VMungo1215G1356 Vigna mungo HOM05D004083 ORTHO05D005029 1.1e-08 64.3 91 42.9
GSVIVG01018045001 Vitis vinifera HOM05D002103 ORTHO05D007890 1.4e-08 63.9 60 51.7
MCO13G142 Micromonas commoda HOM05D002103 ORTHO05D007890 4.1e-08 62.4 186 29.6
Aqoxy3G03641 Aquilegia oxysepala HOM05D004083 ORTHO05D005029 9.0e-08 61.2 69 46.4
SHI27062 Sapria himalayana HOM05D004083 ORTHO05D005029 1.5e-07 60.5 69 46.4
Phvul.003G185100 Phaseolus vulgaris HOM05D004083 ORTHO05D005029 3.4e-07 59.3 91 39.6
CANSAT80G2443 Cannabis sativa HOM05D004083 ORTHO05D005029 4.5e-07 58.9 69 43.5
Lj4g0020958 Lotus japonicus HOM05D004083 ORTHO05D005029 5.9e-07 58.5 69 44.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 5.9e-07 58.5 115 36.5
CiPaw.11G052900 Carya illinoinensis HOM05D004083 ORTHO05D005029 7.7e-07 58.2 69 44.9
Psat0s3618g0080 Pisum sativum HOM05D004083 ORTHO05D005029 7.7e-07 58.2 69 44.9
TPR.G2055 Trifolium pratense HOM05D004083 ORTHO05D005029 1.3e-06 57.4 69 44.9
AT1G74250 Arabidopsis thaliana HOM05D004083 ORTHO05D005029 1.7e-06 57.0 69 42.0
Glyma.05G021300 Glycine max HOM05D004083 ORTHO05D005029 1.7e-06 57.0 69 43.5
AL2G34130 Arabidopsis lyrata HOM05D004083 ORTHO05D005029 2.2e-06 56.6 69 42.0
A01p27370 Brassica napus HOM05D000175 ORTHO05D001341 2.2e-06 56.6 83 33.7
BraA01t02877Z Brassica rapa HOM05D000175 ORTHO05D001341 2.2e-06 56.6 83 33.7
Carub.0002s2104 Capsella rubella HOM05D004083 ORTHO05D005029 2.2e-06 56.6 69 42.0
Glyma.17G078100 Glycine max HOM05D004083 ORTHO05D005029 2.2e-06 56.6 69 43.5
Lalb_Chr13g0302881 Lupinus albus HOM05D004083 ORTHO05D005029 2.2e-06 56.6 91 37.4
Sed0001011 Sechium edule HOM05D004083 ORTHO05D005029 2.2e-06 56.6 69 44.9
GSVIVG01000155001 Vitis vinifera HOM05D006669 ORTHO05D008440 2.2e-06 56.6 79 32.9
ATR0064G112 Amborella trichopoda HOM05D004083 ORTHO05D005029 2.9e-06 56.2 68 44.1
Manes.06G085000 Manihot esculenta HOM05D004083 ORTHO05D005029 2.9e-06 56.2 69 42.0
Manes.12G112200 Manihot esculenta HOM05D006669 ORTHO05D008440 2.9e-06 56.2 93 33.3
SEGI_27500 Sequoiadendron giganteum HOM05D000175 ORTHO05D001341 2.9e-06 56.2 130 29.2
TAR636G3299 Trochodendron aralioides HOM05D001981 ORTHO05D000470 2.9e-06 56.2 85 36.5
MSTRG.7030 Avicennia marina HOM05D001140 ORTHO05D000470 3.8e-06 55.8 77 37.7
BcaC09g49566 Brassica carinata HOM05D000175 ORTHO05D001341 3.8e-06 55.8 83 33.7
C01p35190 Brassica napus HOM05D000175 ORTHO05D001341 3.8e-06 55.8 83 33.7
BolC1t03478H Brassica oleracea HOM05D000175 ORTHO05D001341 3.8e-06 55.8 83 33.7
CARHR067510 Cardamine hirsuta HOM05D004083 ORTHO05D005029 3.8e-06 55.8 69 42.0
Cre17.g713051 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D000470 3.8e-06 55.8 78 35.9
Cre16.g694500 Chlamydomonas reinhardtii HOM05D001140 ORTHO05D146033 5.0e-06 55.5 84 35.7
Lsat_1_v5_gn_6_28181 Lactuca sativa HOM05D007480 ORTHO05D009460 5.0e-06 55.5 99 36.4
arahy.Tifrunner.gnm1.ann1.UN52J1 Arachis hypogaea HOM05D004083 ORTHO05D005029 6.5e-06 55.1 91 39.6
Haze_07719 Corylus avellana HOM05D004083 ORTHO05D005029 6.5e-06 55.1 69 42.0
SMO203G0173 Selaginella moellendorffii HOM05D004083 ORTHO05D005029 6.5e-06 55.1 68 44.1
Aa31LG4G4540 Aethionema arabicum HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 42.6
arahy.Tifrunner.gnm1.ann1.9WPU3R Arachis hypogaea HOM05D004083 ORTHO05D005029 8.5e-06 54.7 91 39.6
BcaB05g24846 Brassica carinata HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
BcaC03g15492 Brassica carinata HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
BcaC03g15497 Brassica carinata HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
A02p19220 Brassica napus HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
C02p31810 Brassica napus HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
BolC2t09208H Brassica oleracea HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
BraA02t06969Z Brassica rapa HOM05D004083 ORTHO05D005029 8.5e-06 54.7 68 39.7
CDE09G0007 Ceratophyllum demersum HOM05D001349 ORTHO05D001980 8.5e-06 54.7 73 38.4
AUR62004631 Chenopodium quinoa HOM05D007480 ORTHO05D009460 8.5e-06 54.7 82 39.0
COL.COLO4_11531 Corchorus olitorius HOM05D006669 ORTHO05D008440 8.5e-06 54.7 78 34.6
Eucgr.K02127 Eucalyptus grandis HOM05D001981 ORTHO05D000470 8.5e-06 54.7 79 36.7
Mapoly0088s0065 Marchantia polymorpha HOM05D004083 ORTHO05D005029 8.5e-06 54.7 73 38.4
THA.LOC104806791 Tarenaya hassleriana HOM05D007480 ORTHO05D009460 8.5e-06 54.7 71 36.6


User provided reference genes

Program Settings