Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 7.7e-71 270.4 138 100.0
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.3e-50 201.8 137 81.0
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.7e-49 198.4 129 81.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 8.2e-49 197.2 137 79.6
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-26 123.6 131 58.8
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 6.6e-22 107.8 136 58.8
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 8.6e-22 107.5 135 53.3
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 1.5e-21 106.7 130 52.3
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.3e-21 105.1 135 54.1
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 8.0e-20 100.9 127 51.2
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 8.9e-19 97.4 125 50.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 9.8e-18 94.0 127 51.2
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.9e-16 89.7 125 48.0
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 4.1e-16 88.6 127 48.8
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 5.4e-16 88.2 81 63.0
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 3.5e-15 85.5 129 51.9
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 1.7e-14 83.2 130 47.7
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 6.8e-11 71.2 134 44.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.0e-10 69.7 136 41.9
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 7.5e-10 67.8 58 62.1
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 7.5e-10 67.8 136 41.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.5e-10 67.8 136 41.2
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.5e-10 67.8 133 41.4
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 7.5e-10 67.8 122 42.6
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.8e-10 67.4 133 42.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.3e-09 67.0 110 43.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.2e-09 66.2 51 66.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.2e-09 66.2 65 61.5
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.9e-09 65.9 62 58.1
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.9e-09 65.9 145 39.3
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.9e-09 65.9 62 58.1
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.7e-09 65.5 127 39.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.7e-09 65.5 62 59.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.7e-09 65.5 65 58.5
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.9e-09 65.1 68 52.9
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.9e-09 65.1 68 52.9
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 6.4e-09 64.7 79 53.2
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 8.3e-09 64.3 127 42.5
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 8.3e-09 64.3 127 42.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.9e-08 63.2 47 68.1
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.9e-08 63.2 57 64.9
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-08 63.2 68 52.9
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-08 63.2 131 38.9
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 2.4e-08 62.8 131 38.2
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.4e-08 61.6 65 56.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.4e-08 61.6 124 38.7
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 7.1e-08 61.2 129 35.7
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 9.2e-08 60.8 66 50.0
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 9.2e-08 60.8 144 37.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.2e-07 60.5 69 50.7
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 1.2e-07 60.5 131 37.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.2e-07 60.5 51 62.7
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-07 60.1 59 52.5
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.6e-07 60.1 59 52.5
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.6e-07 60.1 93 46.2
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 2.1e-07 59.7 64 54.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.1e-07 59.7 59 52.5
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.1e-07 59.7 51 64.7
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.1e-07 59.7 103 41.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 2.1e-07 59.7 136 39.0
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.7e-07 59.3 43 72.1
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.7e-07 59.3 58 58.6
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.7e-07 59.3 41 70.7
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.7e-07 59.3 41 70.7
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 3.5e-07 58.9 53 67.9
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.5e-07 58.9 45 71.1
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.5e-07 58.9 54 63.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 3.5e-07 58.9 63 50.8
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.5e-07 58.9 144 36.1
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.5e-07 58.9 97 43.3
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.6e-07 58.5 60 55.0
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.6e-07 58.5 55 60.0
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.0e-07 58.2 111 40.5
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 6.0e-07 58.2 72 48.6
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 6.0e-07 58.2 86 43.0
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 6.0e-07 58.2 48 66.7
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 6.0e-07 58.2 109 33.9
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 6.0e-07 58.2 57 56.1
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 6.0e-07 58.2 51 60.8
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 6.0e-07 58.2 69 55.1
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 7.8e-07 57.8 33 84.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 7.8e-07 57.8 47 66.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 7.8e-07 57.8 62 54.8
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 7.8e-07 57.8 47 63.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.8e-07 57.8 87 43.7
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 7.8e-07 57.8 53 62.3
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 7.8e-07 57.8 48 62.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-06 57.4 37 75.7
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.0e-06 57.4 92 40.2
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.0e-06 57.4 45 66.7
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.0e-06 57.4 43 67.4
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.3e-06 57.0 54 55.6
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 1.3e-06 57.0 126 38.1
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 54 59.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.3e-06 57.0 121 40.5
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.3e-06 57.0 73 49.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.3e-06 57.0 47 63.8
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-06 57.0 76 48.7
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 1.3e-06 57.0 44 63.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.7e-06 56.6 40 70.0
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.7e-06 56.6 110 41.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.7e-06 56.6 46 63.0
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 65 52.3
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 68 44.1
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.7e-06 56.6 45 64.4
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.3e-06 56.2 54 55.6
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.3e-06 56.2 47 59.6
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 42 69.0
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.0e-06 55.8 46 63.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.0e-06 55.8 123 35.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 3.0e-06 55.8 47 59.6
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.0e-06 55.8 116 37.1
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 3.9e-06 55.5 35 80.0
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 3.9e-06 55.5 50 60.0
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 3.9e-06 55.5 50 60.0
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.9e-06 55.5 45 62.2
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 3.9e-06 55.5 86 41.9
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 5.1e-06 55.1 121 36.4
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.1e-06 55.1 73 45.2
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.1e-06 55.1 73 45.2
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 5.1e-06 55.1 111 42.3
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.1e-06 55.1 49 59.2
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 5.1e-06 55.1 41 68.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 5.1e-06 55.1 65 52.3
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 5.1e-06 55.1 123 39.0
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 5.1e-06 55.1 43 62.8
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 5.1e-06 55.1 50 58.0
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 6.6e-06 54.7 126 39.7
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.6e-06 54.7 46 58.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 6.6e-06 54.7 120 40.8
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 6.6e-06 54.7 50 60.0
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 6.6e-06 54.7 50 60.0
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 6.6e-06 54.7 50 60.0
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 6.6e-06 54.7 50 60.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 8.6e-06 54.3 56 51.8
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 8.6e-06 54.3 130 36.9
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 8.6e-06 54.3 42 66.7


User provided reference genes

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