Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 1.0e-298 1029.2 504 100.0
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.5e-281 972.2 500 95.6
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 9.4e-260 899.8 494 88.9
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.6e-257 891.7 499 87.8
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.2e-240 835.5 511 78.5
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.1e-239 831.6 511 79.5
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 7.5e-233 810.4 510 78.6
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.4e-232 807.4 461 86.8
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.0e-230 802.4 511 78.7
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 7.3e-228 793.9 507 78.3
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 4.3e-196 688.3 515 63.5
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 5.8e-193 677.9 505 65.5
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 3.8e-192 675.2 505 65.3
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.6e-190 669.8 503 64.6
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 2.7e-190 669.1 517 63.4
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 6.7e-189 664.5 506 63.8
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 8.1e-187 657.5 496 62.5
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 6.9e-186 654.4 515 62.3
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 2.6e-185 652.5 517 62.3
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 2.9e-184 649.0 517 60.9
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 8.4e-184 647.5 532 60.3
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.7e-181 637.9 532 59.2
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 4.3e-180 635.2 515 59.4
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 5.6e-180 634.8 487 66.3
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.1e-179 632.9 503 63.0
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 6.2e-179 631.3 511 59.3
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.1e-178 630.6 521 59.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 5.8e-177 624.8 512 61.3
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.6e-174 616.7 502 59.4
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 7.9e-174 614.4 508 60.6
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 3.9e-173 612.1 497 58.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 8.7e-173 610.9 504 59.3
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 7.4e-172 607.8 509 60.1
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.1e-170 604.0 516 57.9
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.4e-170 603.6 497 60.6
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.4e-170 602.8 521 57.8
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 5.3e-170 601.7 508 59.4
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.3e-168 597.0 518 56.9
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.3e-168 597.0 518 57.1
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.7e-168 596.7 505 56.2
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.1e-167 594.0 570 53.9
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.2e-167 592.0 518 56.8
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 4.6e-166 588.6 505 55.4
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.9e-165 585.5 461 61.4
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 4.3e-164 582.0 506 57.7
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 4.8e-163 578.6 507 54.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 8.2e-163 577.8 513 55.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 1.4e-162 577.0 508 54.9
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.8e-162 576.6 508 56.3
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.4e-162 576.2 519 55.5
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 4.1e-162 575.5 505 55.2
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 9.1e-162 574.3 519 54.7
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.3e-160 570.5 508 54.5
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.7e-160 570.1 501 54.3
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.2e-160 569.7 511 54.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.1e-159 567.4 502 56.6
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.4e-159 567.0 484 57.0
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.6e-158 563.5 501 56.1
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 2.1e-158 563.1 513 52.8
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 3.6e-158 562.4 506 54.7
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 6.1e-158 561.6 513 54.8
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 3.0e-157 559.3 518 55.0
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 3.9e-157 558.9 509 53.6
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 5.1e-157 558.5 514 55.8
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 8.8e-157 557.8 513 53.0
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 1.4e-154 550.4 509 54.4
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 4.1e-154 548.9 509 54.2
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.9e-154 548.1 510 53.9
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 3.4e-153 545.8 305 87.5
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 5.9e-153 545.0 510 53.9
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 5.0e-152 542.0 434 61.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 2.5e-151 539.7 400 66.0
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 4.7e-150 535.4 485 53.4
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.0e-149 534.3 482 56.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.8e-149 533.5 483 53.4
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.1e-148 530.8 424 61.3
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.9e-144 516.2 511 50.3
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 8.5e-144 514.6 446 56.7
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 2.1e-142 510.0 505 51.5
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 5.3e-138 495.4 445 57.1
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.6e-137 493.8 365 67.4
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 3.5e-137 492.7 383 63.2
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 3.0e-133 479.6 501 51.7
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.8e-130 470.3 503 48.7
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.3e-120 436.8 507 46.5
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 2.7e-105 386.7 349 57.3
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 5.1e-96 355.9 334 54.5
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 8.9e-93 345.1 449 43.9
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 5.8e-92 342.4 323 52.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 4.1e-90 336.3 313 55.3
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.4e-84 316.2 627 32.9
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 9.9e-84 315.1 473 39.5
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.3e-83 314.7 224 67.9
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 6.4e-83 312.4 247 62.3
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 9.3e-82 308.5 565 34.2
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 3.5e-81 306.6 309 49.2
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 5.4e-74 282.7 620 31.3
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.2e-70 269.2 494 34.0
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 8.1e-70 268.9 207 61.8
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.8e-69 267.7 494 34.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.4e-66 258.1 389 39.6
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 2.3e-64 250.8 188 63.3
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.9e-63 247.7 186 62.9
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.5e-58 230.7 467 35.3
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.6e-49 201.4 189 51.9
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.5e-42 177.6 160 49.4
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 6.7e-40 169.5 89 89.9
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.3e-39 167.2 146 56.8
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 2.2e-35 154.5 129 55.8
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-30 137.5 306 32.0
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 1.8e-29 134.8 179 43.0
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 3.8e-27 127.1 108 56.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 7.2e-26 122.9 128 52.3
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 4.0e-24 117.1 247 32.0
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.4e-23 113.6 59 88.1
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 8.0e-17 92.8 43 90.7
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.0e-15 88.2 145 40.0
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 4.4e-15 87.0 65 56.9
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 4.0e-08 63.9 388 21.1
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 6.8e-08 63.2 391 21.7
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.8e-08 63.2 87 43.7
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 3.4e-07 60.8 387 19.6
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.3e-06 58.9 389 20.6
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 1.3e-06 58.9 73 41.1
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 1.7e-06 58.5 388 20.1
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 1.7e-06 58.5 388 20.1
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.9e-06 57.0 388 19.3


User provided reference genes

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