Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g211480 Pisum sativum HOM05D003369 ORTHO05D004089 4.3e-74 281.2 138 100.0
Psat4g220880 Pisum sativum HOM05D003369 ORTHO05D004089 5.2e-27 124.8 65 92.3
Psat0s4462g0120 Pisum sativum HOM05D003369 ORTHO05D004089 6.8e-27 124.4 65 92.3
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 1.5e-26 123.2 80 75.0
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 3.4e-26 122.1 80 75.0
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 1.4e-24 116.7 65 83.1
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 1.4e-24 116.7 65 83.1
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 1.4e-24 116.7 65 86.2
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 3.2e-24 115.5 65 84.6
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 4.1e-24 115.2 80 71.2
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 5.4e-24 114.8 65 84.6
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 7.0e-24 114.4 65 83.1
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 7.0e-24 114.4 80 70.0
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 1.2e-23 113.6 65 83.1
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 1.2e-23 113.6 65 83.1
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.6e-23 113.2 80 68.8
Glyma.10G170400 Glycine max HOM05D003369 ORTHO05D004089 2.0e-23 112.8 61 88.5
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 4.6e-23 111.7 80 67.5
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 4.6e-23 111.7 65 81.5
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 4.6e-23 111.7 64 82.8
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 5.9e-23 111.3 65 80.0
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 7.8e-23 110.9 61 86.9
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 7.8e-23 110.9 64 82.8
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 7.8e-23 110.9 65 84.6
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 7.8e-23 110.9 64 81.2
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.0e-22 110.5 64 82.8
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 1.0e-22 110.5 64 82.8
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 1.0e-22 110.5 65 83.1
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 1.3e-22 110.2 65 80.0
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 1.3e-22 110.2 65 80.0
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 1.3e-22 110.2 65 80.0
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.3e-22 110.2 64 79.7
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 1.3e-22 110.2 65 80.0
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.3e-22 110.2 65 81.5
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 1.7e-22 109.8 64 82.8
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.7e-22 109.8 64 79.7
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 1.7e-22 109.8 64 81.2
Lalb_Chr02g0149401 Lupinus albus HOM05D003369 ORTHO05D004089 1.7e-22 109.8 65 80.0
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 1.7e-22 109.8 64 81.2
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 2.3e-22 109.4 64 81.2
Medtr1g078330 Medicago truncatula HOM05D003369 ORTHO05D004089 2.9e-22 109.0 61 86.9
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 78.1
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 3.9e-22 108.6 65 78.5
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 81.2
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 81.2
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 3.9e-22 108.6 64 79.7
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 3.9e-22 108.6 61 82.0
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.0e-22 108.2 64 79.7
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 5.0e-22 108.2 65 78.5
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 5.0e-22 108.2 65 80.0
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 6.6e-22 107.8 64 79.7
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 6.6e-22 107.8 64 79.7
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 8.6e-22 107.5 64 79.7
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 8.6e-22 107.5 65 81.5
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 8.6e-22 107.5 66 75.8
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 8.6e-22 107.5 64 78.1
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 1.1e-21 107.1 64 78.1
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 1.1e-21 107.1 64 75.0
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.1e-21 107.1 64 79.7
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 1.1e-21 107.1 64 79.7
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 1.1e-21 107.1 77 67.5
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 1.1e-21 107.1 64 78.1
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.5e-21 106.7 65 76.9
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.5e-21 106.7 57 87.7
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 1.9e-21 106.3 64 78.1
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 1.9e-21 106.3 65 80.0
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.9e-21 106.3 57 87.7
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 1.9e-21 106.3 64 76.6
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.5e-21 105.9 57 86.0
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 2.5e-21 105.9 64 78.1
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 2.5e-21 105.9 58 84.5
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 3.3e-21 105.5 65 78.5
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 3.3e-21 105.5 61 80.3
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 3.3e-21 105.5 64 76.6
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 3.3e-21 105.5 56 87.5
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.3e-21 105.5 64 81.2
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 4.3e-21 105.1 65 75.4
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 4.3e-21 105.1 63 77.8
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 5.6e-21 104.8 65 76.9
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 5.6e-21 104.8 61 78.7
Haze_05900 Corylus avellana HOM05D003369 ORTHO05D004089 7.3e-21 104.4 61 80.3
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 7.3e-21 104.4 64 76.6
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 9.5e-21 104.0 64 75.0
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 9.5e-21 104.0 65 76.9
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.5e-21 104.0 64 75.0
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.5e-21 104.0 64 75.0
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 9.5e-21 104.0 64 75.0
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 9.5e-21 104.0 64 76.6
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 9.5e-21 104.0 65 76.9
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 1.2e-20 103.6 64 76.6
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.2e-20 103.6 79 63.3
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 1.6e-20 103.2 64 76.6
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 1.6e-20 103.2 65 75.4
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 2.1e-20 102.8 64 79.7
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 2.1e-20 102.8 64 79.7
MSTRG.8879 Avicennia marina HOM05D003369 ORTHO05D004089 2.8e-20 102.4 64 73.4
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 3.6e-20 102.1 64 75.0
SHI28914 Sapria himalayana HOM05D003369 ORTHO05D004089 3.6e-20 102.1 63 73.0
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 77.0
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 4.7e-20 101.7 61 82.0
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 4.7e-20 101.7 64 78.1
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 6.1e-20 101.3 58 81.0
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 6.1e-20 101.3 80 61.2
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 6.1e-20 101.3 80 61.2
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 6.1e-20 101.3 80 61.2
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 6.1e-20 101.3 64 73.4
SMO361G0532 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 8.0e-20 100.9 64 71.9
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 1.0e-19 100.5 64 78.1
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.0e-19 100.5 65 73.8
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 1.0e-19 100.5 64 78.1
Cpa.g.sc19.46 Carica papaya HOM05D003369 ORTHO05D004089 1.0e-19 100.5 64 76.6
DCAR_005879 Daucus carota HOM05D003369 ORTHO05D004089 1.0e-19 100.5 59 78.0
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 3.1e-19 99.0 61 80.3
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 6.8e-19 97.8 58 75.9
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 1.2e-18 97.1 64 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1623 Anthoceros agrestis HOM05D003369 ORTHO05D004089 1.3e-17 93.6 80 58.8
CBR_g49707 Chara braunii HOM05D003369 ORTHO05D004089 3.2e-16 89.0 61 67.2
Lsat_1_v5_gn_4_100601 Lactuca sativa HOM05D004250 ORTHO05D005264 3.2e-16 89.0 61 70.5
Mapoly0025s0052 Marchantia polymorpha HOM05D003369 ORTHO05D004089 2.0e-15 86.3 64 56.2
Sabra12G0046000 Salix brachista HOM05D003369 ORTHO05D004089 7.8e-15 84.3 52 75.0
BolC4t21866H Brassica oleracea HOM05D003369 ORTHO05D004089 1.6e-12 76.6 39 89.7
CSS0030194 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 8.1e-12 74.3 45 77.8
Cre13.g575300 Chlamydomonas reinhardtii HOM05D003369 ORTHO05D004089 6.8e-11 71.2 49 59.2
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.6e-10 69.3 36 88.9
Duzib251G0615 Durio zibethinus HOM05D003369 ORTHO05D004089 3.4e-10 68.9 43 72.1
SEGI_31936 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 4.4e-10 68.6 43 74.4
PRCOL_00000010 Prasinoderma coloniale HOM05D003369 ORTHO05D004089 2.4e-08 62.8 62 53.2
MCO06G273 Micromonas commoda HOM05D003369 ORTHO05D004089 4.1e-08 62.0 49 57.1
C04p02200 Brassica napus HOM05D003369 ORTHO05D004089 5.4e-08 61.6 57 57.9
C04p02180 Brassica napus HOM05D003369 ORTHO05D004089 7.1e-08 61.2 32 87.5
BolC4t21865H Brassica oleracea HOM05D003369 ORTHO05D004089 7.1e-08 61.2 32 87.5


User provided reference genes

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