Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 3.2e-28 127.9 72 100.0
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 3.0e-26 121.3 72 94.4
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 4.3e-17 90.9 71 74.6
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 6.7e-10 67.0 69 49.3
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 2.5e-09 65.1 41 65.9
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 2.5e-09 65.1 41 65.9
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 2.5e-09 65.1 38 68.4
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 3.3e-09 64.7 68 47.1
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 3.3e-09 64.7 41 65.9
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 3.3e-09 64.7 74 55.4
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 3.3e-09 64.7 41 63.4
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 4.3e-09 64.3 61 49.2
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 9.7e-09 63.2 41 65.9
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 9.7e-09 63.2 41 65.9
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 9.7e-09 63.2 41 65.9
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 9.7e-09 63.2 41 65.9
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 9.7e-09 63.2 41 63.4
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 9.7e-09 63.2 44 59.1
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 9.7e-09 63.2 44 59.1
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 9.7e-09 63.2 44 59.1
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 1.3e-08 62.8 41 65.9
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.3e-08 62.8 51 56.9
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.3e-08 62.8 44 63.6
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 1.7e-08 62.4 71 57.7
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 1.7e-08 62.4 41 63.4
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 1.7e-08 62.4 44 61.4
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.7e-08 62.4 66 45.5
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.7e-08 62.4 37 70.3
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 1.7e-08 62.4 62 43.5
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 2.2e-08 62.0 44 59.1
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 2.2e-08 62.0 44 59.1
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 2.2e-08 62.0 44 59.1
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 2.2e-08 62.0 44 59.1
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 2.2e-08 62.0 41 61.0
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 2.2e-08 62.0 41 63.4
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 2.8e-08 61.6 41 65.9
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 2.8e-08 61.6 44 59.1
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 3.7e-08 61.2 68 41.2
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 3.7e-08 61.2 41 58.5
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 4.8e-08 60.8 39 64.1
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 4.8e-08 60.8 41 58.5
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 6.3e-08 60.5 71 42.3
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 6.3e-08 60.5 41 63.4
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 8.2e-08 60.1 41 61.0
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 8.2e-08 60.1 41 61.0
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 8.2e-08 60.1 37 64.9
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 8.2e-08 60.1 41 58.5
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 8.2e-08 60.1 67 41.8
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.1e-07 59.7 41 61.0
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.4e-07 59.3 41 61.0
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 1.8e-07 58.9 40 57.5
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 1.8e-07 58.9 68 41.2
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 2.4e-07 58.5 41 56.1
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 2.4e-07 58.5 41 58.5
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 3.1e-07 58.2 39 61.5
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 3.1e-07 58.2 41 56.1
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 3.1e-07 58.2 39 59.0
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 3.1e-07 58.2 39 64.1
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 5.3e-07 57.4 44 50.0
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 6.9e-07 57.0 34 70.6
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 6.9e-07 57.0 41 56.1
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 9.1e-07 56.6 37 62.2
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.2e-06 56.2 32 71.9
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.2e-06 56.2 41 51.2
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 2.0e-06 55.5 37 62.2
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.0e-06 55.5 37 62.2
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 2.0e-06 55.5 40 55.0
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 3.4e-06 54.7 40 55.0
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.4e-06 54.7 37 56.8
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 4.5e-06 54.3 37 59.5
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 4.5e-06 54.3 39 56.4
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 4.5e-06 54.3 37 59.5
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 5.9e-06 53.9 41 46.3


User provided reference genes

Program Settings