Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g201480 Pisum sativum HOM05D002889 ORTHO05D003366 5.8e-175 617.5 312 100.0
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 5.1e-139 498.0 362 73.8
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 1.0e-134 483.8 364 72.8
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 8.4e-134 480.7 361 72.9
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 2.4e-128 462.6 362 70.2
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 3.1e-128 462.2 360 68.9
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 9.0e-128 460.7 362 69.1
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 1.5e-127 459.9 362 69.1
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 4.6e-124 448.4 362 67.7
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 5.3e-120 434.9 360 67.2
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 5.3e-120 434.9 360 67.2
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.5e-119 433.3 362 66.0
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 2.1e-116 422.9 361 63.4
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 2.1e-116 422.9 365 64.1
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 3.6e-116 422.2 361 63.4
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 4.6e-116 421.8 362 63.3
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 4.4e-114 415.2 361 63.2
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 4.4e-114 415.2 362 63.8
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.7e-113 413.3 363 63.9
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 2.2e-113 412.9 359 62.7
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 2.8e-113 412.5 364 63.2
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 8.2e-113 411.0 359 62.4
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 8.2e-113 411.0 361 62.6
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 1.1e-112 410.6 365 62.2
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 1.1e-112 410.6 362 62.4
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.4e-112 410.2 363 63.4
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 1.8e-112 409.8 363 62.5
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.8e-112 409.8 363 63.1
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 1.8e-112 409.8 361 62.6
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 2.4e-112 409.5 363 62.0
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 4.1e-112 408.7 363 61.4
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 4.1e-112 408.7 356 64.0
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 9.1e-112 407.5 362 63.5
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 1.5e-111 406.8 363 62.3
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 2.0e-111 406.4 343 65.6
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 2.6e-111 406.0 360 62.8
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 5.9e-111 404.8 361 62.3
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 5.9e-111 404.8 361 61.8
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 1.3e-110 403.7 362 62.2
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 2.2e-110 402.9 362 61.3
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 2.9e-110 402.5 362 61.3
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 2.9e-110 402.5 363 62.5
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 2.9e-110 402.5 363 60.3
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 6.5e-110 401.4 365 60.8
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 8.5e-110 401.0 363 60.9
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 1.9e-109 399.8 363 60.6
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 1.9e-109 399.8 363 60.6
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 1.9e-109 399.8 364 61.0
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 1.9e-109 399.8 347 63.4
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 3.2e-109 399.1 362 60.8
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 2.7e-108 396.0 366 60.1
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 3.6e-108 395.6 365 60.0
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 1.0e-107 394.0 363 60.3
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 1.4e-107 393.7 361 60.4
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.4e-107 393.7 364 60.4
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 3.0e-107 392.5 363 60.3
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 5.2e-107 391.7 366 60.1
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.1e-106 390.6 364 59.1
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 1.1e-106 390.6 363 59.5
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 3.3e-106 389.0 354 60.7
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.7e-106 388.3 364 61.0
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.7e-106 388.3 364 61.0
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 5.7e-106 388.3 366 59.3
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 9.7e-106 387.5 361 60.7
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 1.3e-105 387.1 366 58.2
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.3e-105 387.1 364 59.3
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 1.3e-105 387.1 363 58.4
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 2.2e-105 386.3 355 60.0
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 3.7e-105 385.6 363 59.5
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 3.7e-105 385.6 362 59.1
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 4.8e-105 385.2 362 59.4
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 1.4e-104 383.6 355 60.0
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 1.8e-104 383.3 363 59.2
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 1.8e-104 383.3 363 58.7
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 3.1e-104 382.5 366 59.3
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 3.1e-104 382.5 362 59.4
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 4.1e-104 382.1 366 57.9
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 4.1e-104 382.1 360 58.9
Nitab4.5_0024802g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 4.1e-104 382.1 361 59.6
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 4.1e-104 382.1 362 58.0
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 5.3e-104 381.7 362 57.7
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 9.1e-104 380.9 363 59.0
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 9.1e-104 380.9 366 58.5
Sc05g0002470 Simmondsia chinensis HOM05D002889 ORTHO05D003366 9.1e-104 380.9 362 59.1
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 9.1e-104 380.9 365 59.2
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 1.6e-103 380.2 361 59.3
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 1.6e-103 380.2 360 58.9
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 2.0e-103 379.8 363 58.7
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 2.0e-103 379.8 363 58.7
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 2.0e-103 379.8 366 58.2
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 2.0e-103 379.8 345 60.9
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 2.0e-103 379.8 363 59.0
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 2.6e-103 379.4 362 58.3
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 2.6e-103 379.4 363 59.5
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 3.5e-103 379.0 363 59.0
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 3.5e-103 379.0 366 57.7
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 5.9e-103 378.3 363 58.4
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 5.9e-103 378.3 357 58.5
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 5.9e-103 378.3 363 59.0
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 1.0e-102 377.5 362 58.0
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 1.0e-102 377.5 370 57.3
CAN.G154.1 Capsicum annuum HOM05D002889 ORTHO05D003366 1.3e-102 377.1 368 58.4
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 1.7e-102 376.7 342 59.4
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 2.2e-102 376.3 363 58.7
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 2.9e-102 375.9 362 58.0
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 2.9e-102 375.9 365 57.0
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 8.5e-102 374.4 321 61.7
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 1.1e-101 374.0 365 57.0
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 1.5e-101 373.6 363 58.4
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 1.5e-101 373.6 363 58.4
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 1.5e-101 373.6 363 58.4
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 1.9e-101 373.2 362 57.5
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 1.9e-101 373.2 363 58.1
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 1.9e-101 373.2 369 57.7
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 1.9e-101 373.2 321 62.3
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 2.5e-101 372.9 362 57.5
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 2.5e-101 372.9 363 57.9
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 2.5e-101 372.9 363 57.9
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 2.5e-101 372.9 363 57.9
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 3.2e-101 372.5 355 58.0
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 7.2e-101 371.3 344 60.8
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 1.2e-100 370.5 366 57.4
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 1.2e-100 370.5 371 56.1
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 2.7e-100 369.4 364 57.4
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 6.1e-100 368.2 361 56.8
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 1.4e-99 367.1 363 57.3
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 1.8e-99 366.7 364 57.7
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.8e-99 366.7 346 59.8
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.3e-99 366.3 367 56.9
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 5.2e-99 365.2 344 61.0
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.5e-98 363.6 362 55.0
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 2.0e-98 363.2 342 57.9
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 3.3e-98 362.5 187 96.8
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 4.4e-98 362.1 299 64.9
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 5.7e-98 361.7 344 57.3
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 1.3e-97 360.5 356 55.9
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 2.2e-97 359.8 365 56.7
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 2.8e-97 359.4 342 57.6
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 8.2e-97 357.8 357 57.1
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 1.4e-96 357.1 342 57.0
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.3e-94 350.5 364 57.4
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 8.0e-92 341.3 362 54.4
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 5.2e-91 338.6 350 53.7
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 1.6e-87 327.0 354 51.4
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 1.7e-86 323.6 363 52.3
SHI30570 Sapria himalayana HOM05D002889 ORTHO05D003366 8.8e-83 311.2 362 52.5
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 1.5e-82 310.5 343 51.0
Thecc.04G215400 Theobroma cacao HOM05D002889 ORTHO05D003366 1.1e-80 304.3 354 50.0
Duzib212G0822 Durio zibethinus HOM05D002889 ORTHO05D003366 2.4e-80 303.1 342 52.0
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 4.1e-80 302.4 343 50.4
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 3.8e-78 295.8 348 51.1
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 5.0e-78 295.4 362 51.4
Gohir.A09G053900 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.6e-77 292.0 340 50.6
Gohir.D09G053074 Gossypium hirsutum HOM05D002889 ORTHO05D003366 7.3e-77 291.6 353 50.1
COL.COLO4_05728 Corchorus olitorius HOM05D002889 ORTHO05D003366 9.5e-77 291.2 353 49.6
Gorai.006G054600 Gossypium raimondii HOM05D002889 ORTHO05D003366 3.6e-76 289.3 353 49.9
EL10Ac7g17763 Beta vulgaris HOM05D002889 ORTHO05D003366 3.1e-67 259.6 175 74.3
EL10Ac7g17765 Beta vulgaris HOM05D002889 ORTHO05D003366 3.1e-67 259.6 175 74.3
EL10Ac7g17767 Beta vulgaris HOM05D002889 ORTHO05D003366 3.1e-67 259.6 175 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 7.5e-66 255.0 327 48.3
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 1.5e-61 240.7 375 42.9
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 3.6e-60 236.1 359 44.0
SMO271G0072 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 6.2e-60 235.3 360 41.9
SMO358G0024 Selaginella moellendorffii HOM05D002889 ORTHO05D003366 1.4e-59 234.2 298 47.0
CDE02G1653 Ceratophyllum demersum HOM05D002889 ORTHO05D002017 4.9e-57 225.7 286 47.9
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 6.0e-55 218.8 357 41.7
RcHm_v2.0_Chr1g0330781 Rosa chinensis HOM05D002889 ORTHO05D003366 2.5e-53 213.4 230 50.9
Psat5g155920 Pisum sativum HOM05D002889 ORTHO05D003366 1.6e-52 210.7 113 92.0
Os02g0816300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 8.1e-52 208.4 198 53.5
Psat1g069640 Pisum sativum HOM05D002889 ORTHO05D003366 4.9e-49 199.1 194 62.4
Zm00001eb258850 Zea mays HOM05D002889 ORTHO05D003366 6.4e-49 198.7 194 53.6
AagrBONN_evm.TU.Sc2ySwM_344.3269 Anthoceros agrestis HOM05D002889 ORTHO05D003366 2.3e-46 190.3 344 37.5
CDE08G0296 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 4.0e-43 179.5 327 39.1
Psat5g305680 Pisum sativum HOM05D002889 ORTHO05D003366 4.0e-43 179.5 113 82.3
Pp3c3_31820 Physcomitrium patens HOM05D002889 ORTHO05D003366 5.2e-43 179.1 170 53.5
CBR_g12856 Chara braunii HOM05D002889 ORTHO05D003366 3.0e-38 163.3 190 46.8
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 3.5e-31 139.8 95 68.4
Psat7g250920 Pisum sativum HOM05D002889 ORTHO05D003366 1.3e-28 131.3 69 88.4
CBR_g8667 Chara braunii HOM05D002889 ORTHO05D003366 5.7e-13 79.3 73 53.4
Psat3g050120 Pisum sativum HOM05D002889 ORTHO05D003366 9.7e-13 78.6 41 95.1
PRCOL_00006275 Prasinoderma coloniale HOM05D002889 ORTHO05D003366 3.1e-11 73.6 150 32.7
Cre03.g154425 Chlamydomonas reinhardtii HOM05D002889 ORTHO05D003366 3.6e-07 60.1 102 32.4


User provided reference genes

Program Settings