Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.7e-102 375.9 183 100.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.4e-99 366.3 183 96.7
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 6.7e-99 364.0 183 96.2
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.6e-98 362.1 183 95.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 9.1e-96 353.6 183 94.5
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 2.0e-95 352.4 181 93.4
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.9e-94 348.6 181 92.3
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.9e-94 348.6 181 92.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.8e-94 348.2 181 92.3
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.1e-93 346.7 181 92.3
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 4.7e-92 341.3 181 90.1
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.4e-91 339.7 181 89.5
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.3e-91 339.0 175 93.1
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.3e-91 339.0 181 90.1
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.3e-91 339.0 181 89.5
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 6.8e-91 337.4 181 89.5
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.2e-90 336.7 175 92.0
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.0e-90 335.9 181 87.3
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.0e-90 335.9 181 87.3
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 2.0e-90 335.9 180 88.9
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.4e-90 334.7 180 87.8
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 4.4e-90 334.7 175 90.9
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 7.5e-90 334.0 189 86.2
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 9.8e-90 333.6 181 89.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 9.8e-90 333.6 181 86.7
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.7e-89 332.8 181 88.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 4.8e-89 331.3 181 87.8
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 6.3e-89 330.9 180 87.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 6.3e-89 330.9 180 87.8
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.8e-88 329.3 181 86.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.4e-88 328.9 183 86.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.4e-88 328.9 181 86.2
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.1e-88 328.6 181 86.2
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 3.1e-88 328.6 181 86.7
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 7.0e-88 327.4 183 84.7
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 7.0e-88 327.4 183 85.8
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 9.1e-88 327.0 180 86.7
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.6e-87 326.2 183 84.7
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 2.7e-87 325.5 181 86.7
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 2.7e-87 325.5 181 86.7
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 5.9e-87 324.3 183 83.6
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 7.7e-87 323.9 181 86.2
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.9e-86 322.0 175 89.7
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.8e-86 321.6 183 82.0
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 3.8e-86 321.6 196 81.6
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 5.0e-86 321.2 175 90.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 5.0e-86 321.2 175 90.3
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.5e-86 320.9 183 84.2
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 8.6e-86 320.5 178 84.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.5e-85 319.7 183 82.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 1.5e-85 319.7 183 81.4
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.5e-85 318.9 183 82.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.5e-85 318.9 181 81.8
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.5e-85 318.9 182 83.5
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.5e-85 318.9 183 80.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.5e-85 318.9 183 80.9
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.5e-85 318.9 183 80.9
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.3e-85 318.5 183 80.3
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 7.2e-85 317.4 181 80.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 9.5e-85 317.0 181 84.0
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.5e-85 317.0 176 86.4
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.2e-84 316.6 183 80.9
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.6e-84 316.2 181 84.5
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 2.1e-84 315.8 181 80.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.8e-84 315.5 182 83.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.6e-84 315.1 181 80.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.7e-84 314.7 186 79.6
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 4.7e-84 314.7 181 80.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.1e-84 314.3 181 80.1
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 6.1e-84 314.3 181 80.1
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 6.1e-84 314.3 181 80.1
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 8.0e-84 313.9 181 80.7
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 8.0e-84 313.9 181 80.7
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 8.0e-84 313.9 181 80.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-83 313.5 181 80.1
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-83 313.5 181 80.1
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.0e-83 313.5 180 80.6
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.4e-83 313.2 180 83.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.8e-83 312.8 181 79.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 3.0e-83 312.0 181 79.6
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.0e-83 311.6 175 85.7
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 5.2e-83 311.2 175 85.7
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 6.8e-83 310.8 181 79.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.2e-82 310.1 183 78.7
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.2e-82 310.1 183 82.0
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.5e-82 309.7 203 75.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.0e-82 309.3 181 84.0
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 4.4e-82 308.1 182 80.8
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 7.5e-82 307.4 181 79.6
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 8.3e-81 303.9 179 82.1
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-80 303.5 184 77.7
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 1.4e-80 303.1 202 75.2
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.5e-79 298.1 181 78.5
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.7e-78 296.2 164 87.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.9e-77 292.7 181 76.8
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.9e-77 292.7 178 78.7
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.0e-75 285.4 174 79.3
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 6.8e-75 284.3 184 73.9
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.2e-73 279.3 256 58.6
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 8.3e-73 277.3 175 74.3
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.7e-71 272.3 159 86.2
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.3e-70 269.2 172 74.4
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.9e-69 266.2 173 70.5
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 7.3e-69 264.2 188 70.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 8.0e-68 260.8 182 72.5
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.6e-66 255.8 143 86.0
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 3.7e-65 251.9 182 70.9
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.2e-63 246.9 181 69.1
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.0e-62 243.8 169 70.4
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 5.2e-59 231.5 182 65.9
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.5e-53 212.6 137 78.1
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-51 207.2 119 83.2
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 6.8e-51 204.5 178 58.4
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.8e-49 198.7 171 53.8
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 9.2e-48 194.1 114 79.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.7e-46 189.9 181 52.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 3.0e-46 189.1 118 80.5
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.1e-45 187.2 100 86.0
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 1.1e-45 187.2 115 79.1
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 2.8e-44 182.6 100 84.0
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 4.0e-43 178.7 102 85.3
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-40 170.6 115 71.3
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 1.7e-38 163.3 99 78.8
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.8e-36 156.0 82 90.2
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.8e-36 156.0 180 49.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 3.8e-33 145.6 93 82.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.4e-32 142.9 83 79.5
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.3e-29 132.5 190 37.9
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.1e-27 127.5 94 71.3
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 3.4e-18 95.9 103 48.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.5e-17 91.7 64 62.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.5e-13 79.7 132 43.2
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 4.1e-11 72.4 56 66.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.6e-10 69.7 30 100.0
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 3.8e-09 65.9 30 93.3
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.1e-08 64.3 35 80.0


User provided reference genes

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