Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 0.0e+00 1789.6 1192 100.0
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 0.0e+00 1411.7 1194 81.4
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 0.0e+00 1295.4 1203 74.3
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 0.0e+00 1193.3 1087 79.9
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 0.0e+00 1144.4 1162 73.7
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.4e-306 1056.6 1201 68.4
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 9.2e-306 1053.9 1162 64.9
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 1.2e-281 973.8 958 58.6
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 4.8e-278 961.8 1205 67.0
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 5.9e-220 768.8 1162 50.9
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-212 744.6 1190 45.4
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 2.8e-209 733.4 1171 51.2
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 3.0e-195 686.8 1196 40.4
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 5.6e-194 682.6 980 45.3
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 7.5e-191 672.2 1164 48.5
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 2.4e-189 667.2 964 48.0
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 2.4e-189 667.2 980 43.0
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-188 664.8 1172 45.4
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.0e-188 662.5 1173 47.1
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 4.4e-183 646.4 962 44.9
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 6.4e-182 642.5 1157 45.8
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 7.1e-181 639.0 1086 49.4
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 9.2e-181 638.6 1179 44.8
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 4.7e-177 626.3 983 44.5
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 2.4e-176 624.0 1161 47.5
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 9.9e-175 618.6 775 66.3
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.7e-174 617.8 900 47.8
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 2.2e-174 617.5 1163 43.3
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.4e-173 614.8 1167 45.7
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.9e-173 614.4 956 46.1
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 7.1e-173 612.5 1183 44.6
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.6e-172 611.3 1164 45.2
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 7.3e-170 602.4 1184 38.0
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.1e-169 600.9 1171 45.1
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.2e-167 595.1 989 43.0
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 2.1e-164 584.3 1162 46.1
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 5.1e-163 579.7 1183 38.1
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 3.1e-160 570.5 969 42.7
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 2.6e-159 567.4 1196 38.5
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.4e-159 567.0 993 43.6
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 2.2e-158 564.3 1196 40.3
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 1.2e-156 558.5 1180 38.4
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 2.7e-156 557.4 1162 45.0
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 7.9e-156 555.8 996 41.8
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 5.1e-155 553.1 1165 46.0
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 4.8e-153 546.6 1178 43.7
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 1.3e-150 538.5 1174 40.8
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 4.9e-150 536.6 951 43.4
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 8.4e-150 535.8 1176 37.1
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 6.0e-148 529.6 1196 37.2
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 1.0e-142 512.3 974 40.2
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.9e-141 508.1 1166 39.8
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.6e-140 505.0 879 38.7
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 2.7e-140 504.2 991 37.3
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 2.3e-139 501.1 984 41.1
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 8.8e-139 499.2 999 37.4
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 5.7e-138 496.5 1175 32.4
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 1.4e-136 491.9 822 33.6
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 4.5e-135 486.9 962 38.3
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 5.9e-135 486.5 1177 40.4
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 3.2e-133 480.7 1167 37.1
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 3.6e-132 477.2 986 41.0
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.1e-125 455.7 985 35.3
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 7.2e-125 453.0 880 42.8
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 1.1e-122 445.7 982 38.3
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 9.7e-122 442.6 1084 41.1
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 4.5e-119 433.7 959 39.7
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.4e-115 422.2 781 34.2
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 1.2e-114 419.1 1168 31.0
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 2.0e-114 418.3 1168 31.0
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 4.4e-114 417.2 1168 31.0
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 8.2e-113 412.9 399 72.9
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 9.1e-112 409.5 701 44.9
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 5.2e-107 393.7 1184 34.0
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 5.7e-106 390.2 893 29.2
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 6.3e-105 386.7 784 39.4
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 2.4e-104 384.8 703 31.7
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 4.1e-104 384.0 702 31.5
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 3.5e-103 380.9 722 31.7
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 6.6e-102 376.7 726 39.9
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 8.3e-97 359.8 707 36.4
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 1.4e-88 332.4 694 41.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 2.8e-84 318.2 692 41.3
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 4.7e-84 317.4 1131 28.8
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.4e-72 278.5 875 25.3
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.7e-71 275.0 1197 37.7
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.0e-70 273.1 1173 28.2
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 6.6e-70 270.4 968 30.9
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 3.6e-68 264.6 771 28.0
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.6e-68 264.6 464 51.7
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.5e-63 248.1 645 25.9
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 1.2e-58 233.0 319 57.1
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.5e-58 232.6 319 62.4
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 3.4e-58 231.5 944 29.7
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 3.4e-50 204.9 228 47.4
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.3e-46 193.0 467 27.4
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 6.2e-44 184.1 112 80.4
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.5e-40 171.0 244 42.2
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 2.8e-36 158.7 212 41.5
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 2.0e-34 152.5 184 47.3
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 4.9e-33 147.9 501 28.7
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 4.3e-29 134.8 332 31.3
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 4.8e-28 131.3 309 29.8
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 4.1e-27 128.3 242 33.5
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 1.0e-25 123.6 103 54.4
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 1.1e-24 120.2 307 56.0
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.1e-23 115.9 600 33.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.4e-16 93.2 170 50.0
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.2e-15 90.1 186 31.2
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 6.7e-14 84.3 82 52.4
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.3e-12 80.1 91 42.9
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.2e-12 79.3 116 38.8
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 4.8e-12 78.2 116 38.8
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 3.1e-11 75.5 312 23.4
AUR62029073 Chenopodium quinoa HOM05D006740 ORTHO05D008571 9.1e-11 73.9 192 27.1
AUR62031649 Chenopodium quinoa HOM05D006740 ORTHO05D008571 1.2e-10 73.6 192 27.1
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 2.6e-10 72.4 309 24.3
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 5.9e-10 71.2 149 31.5
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 6.5e-09 67.8 479 34.4
EL10Ac2g03436 Beta vulgaris HOM05D006740 ORTHO05D008571 1.4e-08 66.6 164 28.7
Sc14g0006060 Simmondsia chinensis HOM05D006740 ORTHO05D008571 1.4e-08 66.6 159 29.6
BolC3t14808H Brassica oleracea HOM05D006740 ORTHO05D008571 2.5e-08 65.9 220 25.9
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 2.5e-08 65.9 177 30.5
C03p24150 Brassica napus HOM05D006740 ORTHO05D008571 4.2e-08 65.1 220 25.9
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 5.5e-08 64.7 319 23.5
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 5.5e-08 64.7 319 23.5
CSS0044827 Camellia sinensis var. sinensis HOM05D006740 ORTHO05D008571 5.5e-08 64.7 279 25.1
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 7.2e-08 64.3 414 21.5
Carub.0004s1913 Capsella rubella HOM05D006740 ORTHO05D008571 9.4e-08 63.9 220 25.9
Aa31LG5G22560 Aethionema arabicum HOM05D006740 ORTHO05D008571 1.2e-07 63.5 179 26.8
AL4G33600 Arabidopsis lyrata HOM05D006740 ORTHO05D008571 1.2e-07 63.5 220 25.5
EL10Ac4g10254 Beta vulgaris HOM05D005622 ORTHO05D002854 1.6e-07 63.2 212 25.9
EL10Ac4g10271 Beta vulgaris HOM05D005622 ORTHO05D002854 1.6e-07 63.2 212 25.9
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 1.6e-07 63.2 165 27.9
Sp4g19550 Schrenkiella parvula HOM05D006740 ORTHO05D008571 1.6e-07 63.2 220 24.1
CARHR132360 Cardamine hirsuta HOM05D006740 ORTHO05D008571 4.7e-07 61.6 220 25.0
AUR62000117 Chenopodium quinoa HOM05D001669 ORTHO05D002854 4.7e-07 61.6 215 26.0
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 4.7e-07 61.6 154 28.6
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 4.7e-07 61.6 185 24.9
SHI18614 Sapria himalayana HOM05D000175 ORTHO05D010751 6.1e-07 61.2 195 24.1
Gorai.006G190400 Gossypium raimondii HOM05D005622 ORTHO05D002854 8.0e-07 60.8 315 23.2
MD08G1198800 Malus domestica HOM05D006740 ORTHO05D008571 1.0e-06 60.5 177 28.8
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 1.4e-06 60.1 166 25.9
EL10Ac2g03431 Beta vulgaris HOM05D000001 ORTHO05D000003 2.3e-06 59.3 381 19.9
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.3e-06 59.3 122 39.3
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 2.3e-06 59.3 101 32.7
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 3.0e-06 58.9 154 27.9
Atru.chr8.1857 Acer truncatum HOM05D006740 ORTHO05D008571 3.0e-06 58.9 154 27.9
Cfa009828 Carpinus fangiana HOM05D006740 ORTHO05D008571 3.0e-06 58.9 144 31.2
Gohir.A02G001400 Gossypium hirsutum HOM05D006740 ORTHO05D008571 3.0e-06 58.9 154 27.9
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 3.0e-06 58.9 144 29.2
Gohir.D05G389201 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.0e-06 58.9 315 22.9
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 3.0e-06 58.9 144 29.2
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 3.0e-06 58.9 306 21.2
Ah.06g194230 Amaranthus hybridus HOM05D005622 ORTHO05D002854 3.9e-06 58.5 215 24.7
Ah.16g102020 Amaranthus hybridus HOM05D005622 ORTHO05D002854 3.9e-06 58.5 215 24.7
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 3.9e-06 58.5 229 23.6
Gohir.D10G255600 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.9e-06 58.5 315 22.9
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 3.9e-06 58.5 201 27.9
Ca_02412_v3 Cicer arietinum L. HOM05D006740 ORTHO05D008571 5.2e-06 58.2 159 28.9
Ciclev10011107m.g Citrus clementina HOM05D006740 ORTHO05D008571 5.2e-06 58.2 153 28.1
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.2e-06 58.2 148 25.7
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 5.2e-06 58.2 154 28.6
AT2G37230 Arabidopsis thaliana HOM05D006740 ORTHO05D008571 6.7e-06 57.8 220 24.5
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 6.7e-06 57.8 217 25.8
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 6.7e-06 57.8 147 26.5
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 6.7e-06 57.8 148 24.3
Ah.09g235260 Amaranthus hybridus HOM05D007956 ORTHO05D010152 8.8e-06 57.4 251 22.7
Haze_18132 Corylus avellana HOM05D008470 ORTHO05D010644 8.8e-06 57.4 104 30.8
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 8.8e-06 57.4 315 22.9
Sc04g0007650 Simmondsia chinensis HOM05D005622 ORTHO05D002854 8.8e-06 57.4 170 27.1


User provided reference genes

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