Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.5e-263 911.0 432 100.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.1e-244 848.6 434 91.7
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.7e-241 839.0 434 91.0
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.3e-237 824.7 460 85.2
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.6e-223 779.2 434 84.3
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 3.5e-223 778.1 435 84.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.1e-221 773.1 434 84.3
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.5e-221 771.9 434 83.9
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.2e-210 736.5 426 79.6
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.5e-210 734.6 427 80.3
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.7e-209 732.6 427 79.2
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.9e-209 731.9 428 79.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.8e-209 731.5 427 79.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 5.5e-208 727.6 426 80.0
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 7.2e-208 727.2 426 79.1
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.6e-207 726.1 426 78.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.7e-207 725.3 427 78.9
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.7e-207 725.3 426 78.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.6e-207 724.5 426 79.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.3e-206 722.2 433 78.1
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 8.8e-206 720.3 429 78.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-205 719.5 426 77.0
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 4.3e-205 718.0 426 76.8
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 7.4e-205 717.2 440 77.3
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-204 716.1 426 77.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.7e-204 716.1 426 77.5
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.2e-204 715.7 426 76.5
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.2e-204 715.7 426 78.4
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.3e-204 714.1 426 77.5
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.1e-203 713.4 428 77.8
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 3.1e-203 711.8 426 76.3
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.3e-203 711.1 436 75.5
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 6.9e-203 710.7 426 77.9
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 6.9e-203 710.7 426 77.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.5e-202 709.5 427 76.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.4e-202 708.4 433 76.2
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 7.7e-202 707.2 425 78.1
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.0e-201 706.8 426 77.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.3e-201 706.4 427 75.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 1.6e-199 699.5 420 77.1
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.6e-199 699.5 426 74.6
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.7e-199 698.7 426 76.5
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.6e-199 698.4 425 75.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 7.9e-199 697.2 441 73.2
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.4e-198 696.4 423 74.5
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.8e-198 696.0 426 74.2
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.8e-198 693.7 427 75.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 2.2e-196 689.1 426 75.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.8e-196 688.0 431 73.5
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.3e-196 687.6 421 76.5
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.1e-195 685.3 426 73.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.1e-195 683.7 421 77.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.2e-192 674.1 440 72.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 9.4e-192 673.7 406 77.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 2.7e-191 672.2 426 73.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-191 672.2 442 73.3
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.3e-190 669.1 400 78.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-190 669.1 421 75.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.3e-190 669.1 419 73.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.1e-189 666.8 419 74.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.6e-189 665.6 441 72.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.4e-189 664.1 443 72.7
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.4e-187 659.8 436 71.8
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.1e-187 658.7 406 74.4
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.0e-187 657.5 442 71.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.5e-186 654.8 427 71.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.5e-186 654.8 415 73.5
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.9e-185 652.1 407 75.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 8.5e-185 650.6 426 71.4
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.2e-184 648.7 423 71.2
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.6e-183 646.4 363 81.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.7e-182 641.0 430 71.2
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.7e-182 641.0 433 68.4
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.8e-182 640.6 423 71.9
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.5e-181 639.8 432 69.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.5e-181 639.8 427 68.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 2.0e-181 639.4 432 66.9
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.4e-181 638.3 438 69.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 9.7e-181 637.1 433 67.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 9.7e-181 637.1 433 68.1
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 6.3e-180 634.4 437 68.0
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.8e-179 632.9 432 67.8
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.4e-179 632.5 435 67.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.3e-179 631.3 436 67.7
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.0e-178 629.4 437 67.7
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.0e-178 629.4 437 67.7
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.0e-177 627.1 436 67.0
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 6.5e-177 624.4 432 67.4
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.2e-176 620.9 450 65.3
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.6e-175 619.8 437 66.8
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.4e-174 616.7 443 64.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.8e-174 616.3 444 67.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.0e-174 615.1 437 66.1
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 6.8e-174 614.4 458 66.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 6.8e-174 614.4 431 66.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 7.5e-173 610.9 468 64.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.2e-172 609.4 433 67.9
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.6e-170 603.2 430 67.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.0e-169 598.2 398 68.8
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.0e-169 598.2 337 81.3
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.5e-168 595.9 436 62.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 3.3e-168 595.5 340 80.6
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.6e-167 593.2 432 68.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 5.2e-166 588.2 380 74.7
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.4e-163 580.1 398 69.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.8e-163 579.7 381 71.9
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 7.0e-163 577.8 403 67.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.1e-160 570.5 509 58.7
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.6e-160 568.2 397 67.0
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 9.5e-160 567.4 465 59.8
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.0e-158 563.9 429 60.6
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.3e-153 547.0 440 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.6e-151 540.0 440 58.6
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.1e-150 535.8 390 67.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.2e-147 524.2 440 54.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.7e-146 522.7 438 54.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.0e-145 520.8 290 86.2
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.6e-145 518.1 319 74.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-135 487.3 408 60.5
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-125 453.8 425 56.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 4.2e-123 445.7 460 52.0
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 6.6e-121 438.3 289 70.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.3e-119 434.1 345 59.7
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.1e-118 429.5 345 58.6
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.1e-112 411.0 312 65.4
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-111 407.1 392 55.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-110 402.9 260 72.3
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.0e-109 400.2 377 50.1
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 9.4e-91 338.2 414 41.5
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.8e-89 334.0 420 41.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 4.1e-86 322.8 175 90.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.9e-86 322.0 181 78.5
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.5e-85 320.9 211 73.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 1.3e-84 317.8 276 60.1
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 3.6e-74 283.1 223 70.9
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.3e-55 221.5 119 82.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 9.1e-54 215.3 194 53.6
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-50 204.9 181 56.4
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.7e-47 193.4 157 63.7
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.7e-47 193.4 204 51.5
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.3e-43 179.9 239 45.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.5e-43 178.7 237 46.0
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-40 171.0 99 82.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 3.7e-39 166.8 234 41.5
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 6.0e-37 159.5 85 82.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-36 158.7 109 68.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.4e-30 136.3 237 39.2
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 4.4e-24 116.7 70 81.4
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.6e-24 115.9 85 67.1
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 7.1e-22 109.4 135 42.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 6.0e-21 106.3 62 80.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 5.6e-19 99.8 71 63.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.2e-14 83.6 78 55.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.0e-08 64.7 36 77.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 7.6e-08 62.8 61 55.7
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.6e-08 62.8 42 64.3


User provided reference genes

Program Settings