Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.8e-103 379.4 208 100.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-84 316.6 209 78.9
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 7.2e-81 304.3 207 74.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 7.0e-76 287.7 209 71.8
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.7e-75 285.8 201 74.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.2e-74 282.7 209 73.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.6e-70 269.2 211 71.1
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.9e-65 253.1 188 71.8
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.5e-65 250.8 218 64.7
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.3e-61 238.0 208 59.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.1e-60 235.3 185 64.9
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.7e-59 232.6 180 67.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.5e-59 232.3 208 59.6
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 3.8e-58 228.8 174 66.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 8.6e-58 227.6 204 62.3
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 8.6e-58 227.6 176 69.3
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.6e-58 227.6 181 64.6
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.9e-57 226.5 180 64.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 9.5e-57 224.2 180 63.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.2e-56 223.8 179 65.4
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.6e-56 223.4 188 63.8
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.1e-56 223.0 199 59.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.7e-56 221.9 205 57.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 4.7e-56 221.9 169 66.9
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 4.0e-55 218.8 177 64.4
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 5.2e-55 218.4 174 62.6
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 8.9e-55 217.6 173 64.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 8.9e-55 217.6 181 63.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.2e-54 217.2 172 64.5
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.5e-54 216.9 177 62.7
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 2.6e-54 216.1 169 65.1
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.6e-54 216.1 172 64.0
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.6e-54 216.1 172 64.0
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.6e-54 216.1 174 63.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.4e-54 215.7 195 59.5
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.4e-54 215.7 192 60.4
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 3.4e-54 215.7 177 62.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 5.8e-54 214.9 195 59.0
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 9.8e-54 214.2 176 65.9
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.3e-53 213.8 176 63.6
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.2e-53 213.0 175 61.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.9e-53 212.6 196 56.6
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 2.9e-53 212.6 181 63.0
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.9e-53 211.8 180 59.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.9e-53 211.8 195 57.9
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.4e-53 211.5 181 59.7
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 8.3e-53 211.1 179 63.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 8.3e-53 211.1 192 56.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 3.2e-52 209.1 179 62.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.1e-52 208.8 169 64.5
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 7.0e-52 208.0 177 59.9
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.2e-51 207.2 174 62.6
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-51 207.2 203 55.7
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.0e-51 206.5 192 60.4
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.7e-51 206.1 174 62.1
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.7e-50 203.4 172 59.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 3.9e-50 202.2 198 55.6
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.5e-49 200.3 189 56.6
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.5e-49 199.5 172 58.1
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 3.3e-49 199.1 182 58.8
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 6.2e-48 194.9 231 51.1
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 6.2e-48 194.9 170 57.6
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 8.0e-48 194.5 207 55.6
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-47 194.1 186 53.8
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.8e-47 193.4 176 58.0
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.0e-47 192.2 171 55.0
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 1.5e-46 190.3 184 53.8
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.4e-46 189.1 173 58.4
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.8e-46 188.3 208 52.4
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.2e-45 186.4 176 56.2
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.2e-45 186.4 176 54.5
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.4e-44 183.7 177 56.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.2e-44 182.6 176 56.8
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.1e-44 182.2 187 55.6
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.1e-44 182.2 174 53.4
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.4e-44 181.8 176 56.8
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.7e-43 179.5 176 51.7
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 4.6e-43 178.7 119 71.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 4.6e-43 178.7 176 56.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 7.8e-43 177.9 144 63.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 2.3e-42 176.4 120 69.2
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.3e-42 176.4 174 51.7
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.3e-42 176.4 169 52.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.0e-42 176.0 211 49.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 5.1e-42 175.3 172 54.1
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 6.6e-42 174.9 172 52.9
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.6e-42 174.9 133 67.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 2.5e-41 172.9 147 61.2
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 4.3e-41 172.2 154 53.2
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 5.6e-41 171.8 112 74.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 9.5e-41 171.0 121 66.9
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 2.8e-40 169.5 140 62.1
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 3.6e-40 169.1 172 51.7
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 4.7e-40 168.7 198 50.5
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 8.1e-40 167.9 152 57.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-39 167.5 114 73.7
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.1e-39 167.5 110 73.6
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.8e-39 166.8 168 51.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.0e-39 165.6 132 65.2
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 5.2e-39 165.2 114 71.1
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.2e-39 165.2 113 70.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 6.8e-39 164.9 148 53.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.4e-38 162.5 147 57.8
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.4e-38 162.2 114 70.2
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 5.8e-38 161.8 112 70.5
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 5.8e-38 161.8 176 52.8
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 7.5e-38 161.4 114 71.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.9e-37 158.7 112 69.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 4.9e-37 158.7 112 71.4
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.4e-37 158.3 116 68.1
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 8.3e-37 157.9 152 52.6
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.9e-36 156.8 183 48.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.2e-36 156.0 173 49.7
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 7.1e-36 154.8 172 47.1
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 2.7e-35 152.9 137 55.5
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.7e-34 150.2 143 52.4
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.3e-34 149.8 174 45.4
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 2.3e-34 149.8 176 48.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 3.0e-34 149.4 191 47.1
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 3.0e-34 149.4 149 53.7
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.5e-33 146.4 112 64.3
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-32 144.1 143 57.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-32 143.7 114 61.4
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 3.6e-32 142.5 157 49.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.1e-31 141.0 176 50.0
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.4e-31 139.8 77 83.1
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.8e-31 138.3 174 47.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.4e-28 128.6 122 56.6
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-26 123.6 134 53.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.0e-26 122.9 96 59.4
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.9e-25 120.2 112 52.7
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.4e-22 109.4 77 62.3
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 9.9e-22 107.8 124 51.6
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.9e-20 103.6 174 37.9
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.4e-20 102.1 102 52.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.1e-19 100.1 211 36.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.1e-17 94.4 81 58.0
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.5e-17 93.2 69 63.8
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.4e-15 87.4 152 38.8
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.4e-15 86.7 70 60.0
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.1e-15 86.3 55 74.5
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.3e-15 85.5 123 45.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.3e-15 85.5 48 81.2
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 9.0e-15 84.7 121 46.3
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.5e-14 84.0 45 86.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.5e-14 82.4 71 57.7
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 6.4e-13 78.6 48 72.9
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 8.4e-13 78.2 42 83.3
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.9e-12 77.0 42 83.3
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 2.4e-12 76.6 166 34.3
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.2e-11 74.3 70 60.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.6e-11 72.4 48 68.8
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 4.6e-11 72.4 71 52.1
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 6.0e-11 72.0 69 55.1
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.8e-10 70.5 48 68.8
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.3e-10 70.1 101 42.6
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.5e-09 67.4 47 59.6
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 3.3e-09 66.2 81 51.9
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.3e-08 64.3 65 53.8
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.3e-08 64.3 41 70.7
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.7e-08 62.8 66 50.0
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 3.7e-08 62.8 40 70.0
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 6.2e-08 62.0 66 48.5
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 1.1e-07 61.2 66 53.0
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.1e-07 59.7 41 70.7
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 4.0e-07 59.3 40 67.5
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 6.9e-07 58.5 108 37.0
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-06 57.4 45 57.8
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 4.5e-06 55.8 73 45.2


User provided reference genes

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