Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.8e-300 1034.2 596 100.0
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.1e-202 709.5 609 73.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 5.1e-196 688.3 613 69.5
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.6e-173 612.1 657 63.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-137 494.2 669 53.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.2e-134 481.9 631 53.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 9.1e-129 464.9 654 52.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.2e-125 454.5 651 52.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.1e-121 439.5 629 52.6
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.1e-97 359.8 652 45.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.3e-95 354.0 634 46.7
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-93 347.8 661 44.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 8.1e-93 345.5 683 42.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 8.1e-93 345.5 623 43.8
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.1e-92 345.1 696 43.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.2e-91 341.7 634 46.4
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-91 341.3 703 43.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.4e-89 334.7 682 43.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.6e-85 321.2 601 45.8
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.1e-84 317.0 633 43.1
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.4e-83 313.2 645 42.3
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-81 307.8 588 44.6
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.4e-81 306.2 606 44.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 6.0e-80 302.8 686 41.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.0e-79 300.4 589 45.0
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.5e-78 297.4 568 46.7
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.3e-78 296.6 585 44.4
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 8.1e-77 292.4 582 43.3
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 8.1e-77 292.4 648 41.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 6.9e-76 289.3 589 44.8
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.6e-75 287.3 660 40.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.4e-75 287.0 550 45.5
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.3e-74 285.0 590 44.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.2e-74 284.3 683 37.5
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.8e-74 283.5 567 45.0
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.2e-73 280.4 615 42.6
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.1e-73 279.3 662 40.0
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.1e-73 279.3 657 37.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.1e-72 277.7 607 42.2
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 6.0e-72 276.2 617 40.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-71 275.4 646 40.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 5.6e-70 269.6 598 43.1
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.1e-69 267.7 644 41.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-68 265.0 645 41.1
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-68 265.0 645 41.1
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.0e-68 263.5 645 41.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 6.9e-68 262.7 312 54.8
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 9.0e-68 262.3 662 40.3
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.0e-67 261.2 562 42.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.0e-67 261.2 549 41.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 3.4e-67 260.4 641 39.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.8e-66 256.9 257 61.5
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.5e-65 254.2 632 39.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 7.1e-65 252.7 663 38.3
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.0e-63 248.8 600 40.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.8e-63 248.1 586 40.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.3e-63 247.7 626 40.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 4.3e-62 243.4 257 59.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.8e-61 240.0 686 39.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-60 238.4 591 39.8
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.1e-60 237.3 637 37.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.5e-59 235.0 583 39.8
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 4.5e-59 233.4 648 38.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 9.3e-57 225.7 603 38.3
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 8.7e-55 219.2 537 38.7
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.1e-54 218.8 518 38.6
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.5e-54 217.6 614 38.9
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 4.8e-53 213.4 531 39.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-52 212.2 607 38.9
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.4e-52 211.1 546 38.1
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 3.1e-52 210.7 576 36.5
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-52 210.7 632 34.8
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.1e-52 210.7 577 37.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 5.3e-52 209.9 626 35.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.0e-51 208.0 566 38.5
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.9e-51 206.5 529 39.1
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-50 204.5 502 38.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.5e-50 202.6 673 35.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-49 201.8 534 37.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.5e-49 201.1 580 38.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 4.2e-49 200.3 595 36.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 7.2e-49 199.5 644 36.0
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.6e-48 197.2 603 33.7
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.6e-48 197.2 551 34.3
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-47 195.7 538 36.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.4e-47 195.3 548 38.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.4e-47 195.3 587 34.6
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.0e-47 194.1 537 38.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.3e-46 190.7 619 34.4
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.3e-46 190.3 505 34.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.7e-45 188.3 605 36.4
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.8e-45 187.6 618 36.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.8e-45 186.8 532 35.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-44 185.3 582 35.4
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 3.1e-44 184.1 428 43.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 7.7e-43 179.5 627 32.7
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 3.8e-42 177.2 382 40.3
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.8e-42 177.2 432 41.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 7.2e-41 172.9 150 66.0
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 9.4e-41 172.6 604 32.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.7e-40 170.2 689 34.5
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.3e-39 167.9 679 32.8
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 5.1e-39 166.8 566 34.5
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.3e-38 164.1 565 34.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 5.7e-38 163.3 528 35.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.2e-37 161.4 309 45.3
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.8e-37 161.0 501 35.7
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.8e-37 161.0 545 34.7
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.2e-37 159.5 473 35.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.4e-36 158.7 442 38.5
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.8e-36 158.3 492 34.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.1e-36 157.1 678 30.4
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.3e-36 156.8 570 35.6
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.0e-36 156.4 578 33.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 9.1e-36 156.0 611 35.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 9.1e-36 156.0 512 34.2
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.5e-35 153.7 584 33.6
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.0e-34 152.5 619 34.1
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.8e-34 150.6 590 35.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.5e-33 146.7 437 36.2
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.4e-31 142.1 584 33.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.0e-31 140.6 600 30.8
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 8.8e-31 139.4 572 33.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 8.8e-31 139.4 569 33.4
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.0e-30 138.3 613 28.5
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.6e-30 137.9 622 32.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.6e-30 137.9 541 33.8
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.6e-30 137.9 168 51.8
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 4.4e-30 137.1 526 34.6
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.3e-29 135.6 509 32.2
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.7e-29 135.2 585 32.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-29 135.2 582 33.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-29 134.8 482 34.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 6.3e-29 133.3 542 31.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-28 132.1 507 32.5
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.3e-28 130.2 384 33.1
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 7.0e-28 129.8 125 63.2
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.5e-27 127.5 614 32.1
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.9e-26 124.4 447 32.2
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 8.5e-26 122.9 174 48.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 3.2e-25 120.9 607 33.1
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 9.4e-25 119.4 74 90.5
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.0e-23 115.9 594 28.1
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 2.0e-22 111.7 96 71.9
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.6e-22 111.3 655 27.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-20 105.5 359 33.1
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.8e-20 105.1 337 37.7
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.4e-20 103.6 535 30.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.5e-17 94.7 502 31.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-17 94.7 502 31.1
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 7.2e-17 93.2 512 29.7
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 7.2e-17 93.2 374 35.3
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 9.4e-17 92.8 504 30.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.6e-16 92.0 507 30.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.5e-14 85.5 536 31.0
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 9.8e-14 82.8 428 31.3
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.9e-11 73.6 496 28.8
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.0e-10 72.8 118 41.5
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.5e-09 68.9 365 35.1
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.5e-09 68.9 145 40.0
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.9e-09 68.6 107 43.0
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 2.5e-09 68.2 89 48.3
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.2e-09 66.6 447 28.2
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 9.5e-09 66.2 146 36.3
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-08 65.9 317 27.8
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.8e-08 64.7 189 32.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.4e-07 62.4 265 27.9
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 1.8e-07 62.0 435 27.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.8e-06 56.2 172 32.6


User provided reference genes

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