Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.6e-95 352.8 186 100.0
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 6.0e-79 297.7 191 89.5
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 1.9e-72 276.2 172 87.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.9e-69 266.2 194 82.0
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 2.8e-60 235.7 190 72.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 3.7e-52 208.8 197 65.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.8e-51 206.5 177 67.2
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 3.1e-51 205.7 185 65.4
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 5.3e-51 204.9 195 64.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.3e-36 157.1 184 55.4
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.5e-34 149.1 199 53.3
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.0e-33 147.5 195 52.8
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-33 146.7 213 51.2
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 3.0e-30 136.0 206 47.6
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 9.8e-29 131.0 192 45.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.2e-28 129.8 202 50.0
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.8e-27 126.7 193 49.7
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.5e-26 122.5 198 47.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 1.0e-25 120.9 189 47.1
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.7e-25 120.2 189 47.1
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.9e-25 119.4 190 45.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 3.8e-25 119.0 203 45.3
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.8e-25 119.0 209 45.5
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.6e-25 117.9 198 46.5
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.1e-24 117.5 191 42.9
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.5e-24 117.1 193 48.2
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.9e-24 116.7 209 47.8
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.5e-24 116.3 179 44.1
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 3.3e-24 115.9 193 47.7
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.3e-24 115.9 191 45.0
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 5.5e-24 115.2 201 47.8
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.2e-24 114.8 182 46.7
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 7.2e-24 114.8 186 45.7
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-23 114.0 179 46.4
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-23 114.0 182 46.7
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-23 113.6 182 46.7
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.6e-23 113.6 166 48.2
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.8e-23 112.8 159 49.1
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.7e-23 112.1 204 44.6
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 8.0e-23 111.3 191 45.0
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.4e-22 110.5 187 46.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.8e-22 110.2 175 44.0
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.8e-22 110.2 186 43.5
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 6.8e-22 108.2 184 45.1
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.9e-22 107.8 187 44.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 8.9e-22 107.8 174 43.7
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-21 107.5 172 41.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.5e-21 107.1 177 41.8
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.6e-21 106.3 178 42.1
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 2.2e-20 103.2 122 53.3
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.2e-20 103.2 172 43.6
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 3.7e-20 102.4 193 43.0
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 4.9e-20 102.1 188 42.0
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.9e-20 102.1 179 43.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.9e-20 102.1 171 43.9
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 6.3e-20 101.7 222 38.7
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-19 100.9 172 40.1
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.1e-19 100.9 172 40.1
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.1e-19 100.9 171 43.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.4e-19 100.5 225 37.3
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.8e-19 100.1 192 42.2
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.1e-19 99.0 171 43.9
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 4.1e-19 99.0 97 61.9
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 7.0e-19 98.2 179 42.5
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 2.0e-18 96.7 192 42.2
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.0e-18 96.7 219 37.4
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.0e-18 96.7 219 37.4
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.0e-18 96.7 196 41.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.5e-18 95.9 201 41.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 3.5e-18 95.9 181 39.2
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-18 95.9 206 40.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-18 95.9 192 42.2
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 5.9e-18 95.1 197 40.1
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.8e-18 94.7 187 39.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 7.8e-18 94.7 201 36.8
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.3e-17 94.0 167 37.7
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.7e-17 93.6 157 45.9
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.3e-17 93.2 149 45.6
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.3e-17 93.2 206 40.3
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.9e-17 92.8 176 40.3
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 2.9e-17 92.8 178 40.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 2.9e-17 92.8 178 41.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.9e-17 92.4 213 40.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.5e-16 89.7 140 46.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 4.3e-16 89.0 201 39.3
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 5.6e-16 88.6 172 40.1
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.6e-16 88.6 187 41.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.6e-15 87.0 169 40.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.1e-15 86.7 216 37.0
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.1e-15 86.7 140 49.3
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.1e-15 86.7 192 39.1
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.8e-15 86.3 165 40.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 3.6e-15 85.9 212 37.3
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.7e-15 85.5 151 37.7
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.7e-15 85.5 191 39.8
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 6.1e-15 85.1 184 38.0
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 6.1e-15 85.1 184 38.0
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 6.1e-15 85.1 153 41.8
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.0e-14 84.3 89 56.2
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.0e-14 84.3 227 35.2
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.4e-14 84.0 112 49.1
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.8e-14 83.6 204 37.7
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.3e-14 83.2 198 35.9
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.3e-14 83.2 210 38.6
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 3.1e-14 82.8 198 39.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 5.2e-14 82.0 206 34.5
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 6.8e-14 81.6 227 34.4
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 6.8e-14 81.6 227 34.4
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 8.9e-14 81.3 209 34.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 8.9e-14 81.3 98 51.0
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 8.9e-14 81.3 98 51.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 8.9e-14 81.3 185 36.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.2e-13 80.9 223 37.2
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.6e-13 79.7 196 38.8
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.4e-13 79.3 205 38.5
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 4.4e-13 79.0 176 38.6
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 5.8e-13 78.6 219 35.2
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 9.8e-13 77.8 180 35.6
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 9.8e-13 77.8 187 36.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 9.8e-13 77.8 116 44.8
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.3e-12 77.4 178 36.5
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.7e-12 77.0 178 39.9
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.7e-12 77.0 112 42.9
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.2e-12 76.6 173 40.5
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.7e-12 75.9 203 34.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 3.7e-12 75.9 183 36.1
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 6.4e-12 75.1 191 37.7
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 8.3e-12 74.7 206 35.9
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.4e-11 73.9 65 61.5
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.9e-11 73.6 70 58.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 2.4e-11 73.2 191 34.6
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 3.2e-11 72.8 212 33.5
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 5.4e-11 72.0 216 35.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 9.2e-11 71.2 213 35.7
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 3.5e-10 69.3 152 36.8
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 7.8e-10 68.2 189 33.3
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.0e-09 67.8 218 33.0
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 3.9e-09 65.9 206 34.0
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 3.9e-09 65.9 71 53.5
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 8.6e-09 64.7 71 47.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.5e-08 63.9 159 36.5
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.9e-08 63.5 219 31.5
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 2.5e-08 63.2 191 33.5
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.3e-08 62.4 225 32.4
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 4.3e-08 62.4 166 33.1
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 7.3e-08 61.6 185 30.3
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 9.5e-08 61.2 139 34.5
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 4.7e-07 58.9 62 54.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 6.2e-07 58.5 176 32.4


User provided reference genes

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