Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 6.9e-273 943.3 468 100.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.5e-240 835.9 459 89.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.1e-237 823.9 459 87.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.5e-206 723.0 462 78.1
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.4e-204 716.5 462 77.3
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.6e-203 712.2 460 75.7
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.1e-201 704.9 458 77.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.7e-200 702.2 462 76.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 6.6e-167 591.3 461 68.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.6e-165 586.6 457 65.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 4.0e-164 582.0 466 66.1
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.4e-163 578.9 462 63.0
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.9e-162 575.1 457 63.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.7e-159 564.3 457 61.7
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.3e-157 560.5 479 59.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 2.8e-157 559.3 488 60.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 3.7e-157 558.9 455 61.5
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 9.0e-156 554.3 442 62.4
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.5e-155 553.5 473 59.4
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 4.5e-155 552.0 455 62.4
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.0e-154 550.8 473 60.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.0e-154 550.8 476 60.3
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.3e-154 550.4 473 60.3
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.2e-154 549.7 475 59.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.2e-154 549.7 472 60.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.1e-153 547.4 483 58.0
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.9e-153 546.6 474 60.5
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 5.5e-153 545.0 470 60.4
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 5.5e-153 545.0 468 60.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 9.3e-153 544.3 480 57.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.5e-152 542.3 480 56.5
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.5e-152 542.3 476 57.6
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.5e-152 542.3 483 58.0
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.5e-152 542.3 457 59.5
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 7.9e-152 541.2 483 57.8
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.8e-151 540.0 481 60.1
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.7e-151 538.1 482 56.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 8.7e-151 537.7 475 60.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 4.3e-150 535.4 474 59.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 5.7e-150 535.0 469 58.4
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.7e-150 535.0 471 59.9
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.7e-150 535.0 475 59.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 7.4e-150 534.6 471 59.9
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 9.6e-150 534.3 458 59.8
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.3e-149 533.9 476 55.5
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.6e-149 533.5 476 55.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-149 533.5 475 58.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-149 533.5 475 59.4
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.1e-149 533.1 476 56.1
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.1e-149 533.1 484 56.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.8e-149 532.7 467 56.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.8e-149 532.7 477 57.2
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 6.2e-149 531.6 476 56.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.2e-149 531.6 471 59.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.2e-149 531.2 467 59.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.1e-148 530.8 455 60.7
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-148 530.8 457 57.8
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.4e-148 530.4 475 58.9
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 5.3e-148 528.5 480 56.9
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 6.9e-148 528.1 470 58.7
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.0e-148 527.7 467 58.9
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.5e-147 526.9 478 57.3
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.0e-147 526.6 451 60.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.0e-147 526.6 477 57.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.8e-147 525.0 473 56.7
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 5.8e-147 525.0 470 57.4
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.8e-146 522.3 470 58.1
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-145 519.2 467 55.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 7.9e-144 514.6 478 55.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.9e-144 514.6 477 55.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 6.7e-143 511.5 477 55.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 7.4e-142 508.1 483 54.9
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.7e-141 505.8 471 55.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.1e-140 502.7 477 54.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 5.3e-140 501.9 461 54.9
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.2e-139 500.7 473 55.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 5.9e-139 498.4 473 54.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.3e-138 497.3 471 55.4
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-137 494.2 477 54.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.5e-137 493.0 478 54.0
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 7.9e-136 488.0 473 53.7
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.0e-135 486.1 454 54.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.3e-134 482.3 477 52.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.7e-134 481.9 455 53.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.7e-133 480.3 458 54.8
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.2e-133 479.9 455 53.8
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 2.8e-133 479.6 474 52.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.7e-133 479.2 472 52.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.1e-132 477.6 456 53.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.4e-132 476.5 458 52.6
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 5.3e-132 475.3 454 54.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 6.9e-132 474.9 454 54.4
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 9.1e-132 474.6 454 53.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 9.1e-132 474.6 454 54.4
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.5e-131 473.8 477 50.7
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-131 473.0 454 53.7
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.5e-131 472.2 454 53.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.2e-130 469.9 454 53.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.2e-130 469.9 455 52.7
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.5e-130 468.0 475 52.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.9e-129 466.8 462 52.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-129 466.5 454 51.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 5.5e-129 465.3 454 51.8
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 5.5e-129 465.3 471 51.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.2e-129 464.9 411 55.5
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 9.4e-129 464.5 445 53.5
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-128 463.4 454 51.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-128 461.8 454 51.3
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.0e-127 459.5 414 54.6
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.0e-127 459.5 459 52.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.9e-127 459.1 411 55.0
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.8e-127 458.0 453 51.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.1e-126 457.6 410 54.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-126 454.9 454 50.9
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-126 454.9 454 50.9
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 7.4e-126 454.9 467 52.0
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.2e-125 453.4 457 51.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.8e-125 453.0 471 51.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 8.2e-125 451.4 427 54.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.8e-124 450.3 468 51.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.1e-124 449.5 413 54.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 7.0e-124 448.4 488 49.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-124 448.4 427 53.9
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 7.0e-124 448.4 476 51.5
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-123 446.4 455 51.4
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 2.6e-123 446.4 456 54.4
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-123 444.9 427 52.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 7.7e-123 444.9 427 52.9
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-122 442.6 458 50.9
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 5.0e-122 442.2 454 51.8
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 5.0e-122 442.2 454 51.8
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.5e-122 441.8 466 50.2
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.1e-120 436.8 454 50.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 6.1e-120 435.3 454 50.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 8.0e-120 434.9 487 47.8
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-117 426.8 473 51.2
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-116 424.1 402 53.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-115 420.2 477 49.1
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.6e-115 419.9 385 53.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.4e-110 402.5 418 49.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 2.8e-109 399.8 463 46.7
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 4.5e-107 392.5 461 47.1
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-105 386.3 296 62.8
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-105 386.3 296 62.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.2e-105 386.0 464 46.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.4e-100 370.9 470 44.7
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.7e-98 364.0 441 42.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.1e-96 357.1 201 89.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.6e-91 339.3 435 41.6
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.8e-91 338.6 434 41.5
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.3e-90 337.0 434 41.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-90 336.7 414 45.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.6e-90 335.5 424 42.2
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-88 330.9 434 41.2
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-84 317.4 337 49.6
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-70 271.2 331 42.9
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.9e-65 254.2 340 46.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-55 221.5 205 55.1
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-55 221.1 205 55.1
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-52 211.1 213 51.2
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.4e-52 210.7 213 54.0
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-46 191.4 166 57.8
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.4e-45 185.7 214 47.2
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 9.6e-33 145.6 187 45.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.9e-30 136.3 339 32.4
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.7e-25 119.8 172 45.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-25 119.4 284 29.6
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.5e-17 94.4 93 52.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.2e-14 85.5 89 50.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 8.5e-13 79.3 91 48.4
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.4e-07 61.2 52 50.0
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.4e-07 61.2 93 39.8


User provided reference genes

Program Settings