Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 5.3e-215 750.7 377 100.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.1e-195 685.6 377 91.8
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.6e-187 658.3 365 90.7
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.0e-181 640.2 380 85.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.0e-177 625.9 377 84.1
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.3e-176 623.2 377 81.2
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 4.8e-168 594.7 383 78.1
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 3.5e-166 588.6 383 77.3
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.0e-165 587.0 377 77.5
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.9e-164 582.8 383 76.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.7e-160 569.7 377 74.8
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.7e-150 535.8 397 66.8
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.6e-142 510.0 399 65.9
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 4.6e-142 508.4 380 68.2
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 1.0e-141 507.3 380 69.2
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 7.3e-140 501.1 397 63.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.5e-137 493.4 400 63.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 3.4e-137 492.3 403 62.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 4.4e-137 491.9 391 63.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.2e-136 489.6 413 61.5
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.2e-136 489.6 399 62.9
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 4.1e-135 485.3 391 63.9
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 6.0e-134 481.5 388 62.9
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.7e-133 479.9 396 62.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 8.6e-133 477.6 321 70.1
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.3e-132 475.7 401 61.6
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 7.3e-132 474.6 399 60.7
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 1.6e-131 473.4 365 65.5
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 4.0e-130 468.8 388 62.1
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 4.0e-130 468.8 321 69.5
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.0e-129 466.5 397 60.7
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.7e-128 462.2 401 60.1
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.9e-127 459.9 388 61.6
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.4e-127 459.5 339 65.5
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 3.5e-126 455.7 397 60.7
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.5e-126 455.7 384 62.2
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.8e-126 454.5 385 61.6
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.0e-125 454.1 405 55.8
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 8.6e-125 451.1 326 66.6
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 8.6e-125 451.1 392 56.1
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.3e-124 449.1 393 60.3
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.3e-124 448.7 462 53.7
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.8e-123 446.0 323 65.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.1e-122 442.6 392 55.4
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.0e-122 442.2 311 69.8
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 8.9e-122 441.0 392 54.6
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.2e-121 440.7 393 55.2
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.2e-121 440.7 312 67.9
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.0e-121 439.9 321 64.5
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 7.6e-121 438.0 382 57.9
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 7.6e-121 438.0 390 57.2
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 9.9e-121 437.6 297 71.4
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 2.9e-120 436.0 380 65.0
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.8e-120 435.6 410 57.8
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 4.9e-120 435.3 374 58.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.9e-120 435.3 383 56.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.9e-120 435.3 383 56.7
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 4.9e-120 435.3 392 54.8
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 8.4e-120 434.5 352 60.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.1e-119 434.1 315 67.0
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.4e-119 433.0 388 55.9
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.4e-119 433.0 389 56.0
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 7.1e-119 431.4 356 58.7
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.1e-119 431.4 392 54.6
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 7.8e-118 427.9 387 54.5
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.3e-117 427.2 399 54.9
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-117 427.2 322 62.7
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.7e-117 426.8 394 55.3
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.1e-117 425.2 386 54.9
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.5e-116 422.9 321 62.9
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.5e-116 422.9 321 62.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.3e-116 421.4 321 62.6
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.3e-115 420.6 321 62.0
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.8e-115 419.5 396 53.5
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.8e-115 419.5 404 54.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 8.1e-115 417.9 331 63.1
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 4.0e-114 415.6 304 64.1
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 4.0e-114 415.6 400 53.8
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.4e-113 412.5 308 63.0
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 4.4e-113 412.1 382 55.0
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 4.4e-113 412.1 316 62.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 5.8e-113 411.8 316 62.3
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 7.6e-113 411.4 383 54.3
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 3.8e-112 409.1 316 61.7
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.9e-112 408.7 322 61.8
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 6.0e-110 401.7 384 52.1
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.5e-108 397.1 401 50.1
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.5e-108 397.1 324 61.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 7.4e-108 394.8 328 59.1
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 9.6e-108 394.4 382 53.9
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.1e-106 391.0 400 50.0
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.4e-106 390.6 380 54.7
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.8e-106 390.2 304 58.2
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 6.9e-106 388.3 382 53.9
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-105 387.1 344 58.7
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 3.4e-105 386.0 325 59.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 3.2e-103 379.4 313 60.7
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 9.3e-103 377.9 314 59.6
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.1e-102 376.7 378 49.7
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 6.9e-98 361.7 334 56.6
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.4e-97 359.4 314 56.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.2e-96 356.7 312 55.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 6.5e-96 355.1 391 48.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 4.2e-95 352.4 320 54.1
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.1e-90 335.9 270 62.6
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 3.8e-88 329.3 276 58.0
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 7.9e-86 321.6 299 55.5
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 7.4e-84 315.1 357 49.3
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 9.7e-84 314.7 333 50.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.6e-83 313.9 280 59.3
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 5.0e-80 302.4 266 57.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.5e-79 298.9 230 62.2
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 5.7e-76 288.9 271 55.0
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 3.9e-69 266.2 241 60.2
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.2e-62 244.6 308 46.4
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-60 238.0 259 51.4
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.2e-52 211.5 278 40.6
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 1.7e-43 181.0 123 67.5
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-42 178.3 132 65.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 2.9e-40 170.2 124 70.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 5.2e-37 159.5 181 45.9
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 1.5e-36 157.9 322 29.5
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 7.8e-33 145.6 76 89.5
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.9e-31 141.0 321 29.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.3e-24 118.2 200 37.0
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.9e-24 116.7 102 60.8
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 3.9e-24 116.7 150 36.7
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 1.6e-22 111.3 108 56.5
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 8.1e-22 109.0 91 59.3
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.3e-21 107.5 284 26.8
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.3e-21 107.5 68 67.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 5.2e-21 106.3 246 26.8
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.4e-18 96.3 128 41.4
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.0e-16 90.5 87 55.2
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-12 78.2 119 39.5
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 8.4e-11 72.4 369 21.7
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.2e-09 68.6 70 54.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.5e-07 61.6 39 61.5
Psat2g092480 Pisum sativum HOM05D005247 ORTHO05D006571 1.9e-07 61.2 37 81.1
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 6.2e-06 56.2 59 50.8


User provided reference genes

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