Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 2.9e-165 585.1 286 100.0
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 3.2e-103 379.0 256 76.2
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 2.5e-100 369.4 225 81.8
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 4.2e-87 325.5 225 76.9
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.6e-86 323.6 226 75.7
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.0e-85 320.9 222 73.9
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 8.7e-85 317.8 224 73.2
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.3e-84 315.5 221 75.6
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.8e-82 310.1 224 71.9
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.4e-82 309.7 224 71.9
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 2.1e-78 296.6 252 63.5
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 1.3e-77 293.9 215 73.0
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 1.5e-76 290.4 228 63.6
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.3e-76 289.3 241 63.5
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 6.2e-75 285.0 226 66.4
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.1e-74 284.3 225 64.0
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.1e-74 284.3 226 65.0
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 1.8e-74 283.5 228 64.5
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.2e-73 280.8 190 71.1
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.5e-73 280.4 220 65.0
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 3.4e-73 279.3 225 64.4
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 9.9e-73 277.7 205 67.8
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.3e-72 277.3 226 62.4
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 6.4e-72 275.0 220 62.3
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.1e-71 274.2 205 68.8
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 3.2e-71 272.7 173 74.0
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 5.5e-71 271.9 220 62.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 5.5e-71 271.9 233 62.2
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 7.1e-71 271.6 206 69.9
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 9.3e-71 271.2 186 71.5
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.2e-70 270.8 208 64.9
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 2.1e-70 270.0 232 62.5
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 2.7e-70 269.6 234 61.1
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.5e-70 269.2 209 64.6
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 3.5e-70 269.2 221 63.3
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 7.9e-70 268.1 218 63.8
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.0e-69 267.7 168 75.6
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.0e-69 267.7 228 62.7
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.0e-69 267.7 227 63.0
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.3e-69 266.5 220 62.7
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.0e-69 266.2 176 71.6
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.0e-69 266.2 176 71.6
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 5.1e-69 265.4 193 69.9
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 1.5e-68 263.8 167 74.9
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.5e-68 263.1 228 59.6
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 4.3e-68 262.3 224 63.4
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 5.6e-68 261.9 227 57.3
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 2.8e-67 259.6 201 66.2
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 3.7e-67 259.2 169 75.1
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 4.8e-67 258.8 210 61.4
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 8.1e-67 258.1 228 59.6
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 1.1e-66 257.7 218 58.7
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.1e-66 257.7 233 58.8
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.4e-66 257.3 197 64.0
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.8e-66 256.9 198 65.2
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.4e-66 256.5 210 61.4
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 3.1e-66 256.1 185 63.8
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 5.3e-66 255.4 224 60.7
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 5.3e-66 255.4 166 75.3
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 9.0e-66 254.6 223 60.1
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.2e-65 254.2 214 61.7
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 3.4e-65 252.7 199 64.3
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 4.5e-65 252.3 183 69.4
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 4.5e-65 252.3 183 69.4
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 5.8e-65 251.9 171 69.6
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 2.2e-64 250.0 211 63.5
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 2.9e-64 249.6 193 64.2
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 8.4e-64 248.1 183 68.3
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.1e-63 247.7 181 65.7
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.5e-63 246.5 166 74.1
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 2.5e-63 246.5 217 61.3
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 3.2e-63 246.1 162 71.6
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.5e-63 245.4 209 59.8
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 5.5e-63 245.4 173 67.1
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 5.5e-63 245.4 170 69.4
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 7.1e-63 245.0 175 68.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 9.3e-63 244.6 218 59.2
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.6e-62 243.8 170 71.2
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 3.5e-62 242.7 142 76.1
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 6.0e-62 241.9 217 60.4
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 6.0e-62 241.9 170 70.6
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 7.9e-62 241.5 219 58.4
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 7.9e-62 241.5 170 71.2
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.8e-61 240.4 174 67.2
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.3e-61 240.0 197 62.9
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.3e-61 240.0 210 58.1
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.3e-61 240.0 241 56.8
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 6.7e-61 238.4 192 63.5
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 6.7e-61 238.4 159 69.2
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 6.7e-61 238.4 169 69.8
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 2.5e-60 236.5 222 56.3
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 4.3e-60 235.7 200 63.5
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 6.9e-58 228.4 168 67.9
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.2e-57 227.6 179 62.6
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.5e-57 227.3 156 69.9
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 7.6e-57 224.9 125 83.2
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 1.7e-56 223.8 145 72.4
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.1e-55 221.1 164 62.8
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 6.1e-54 215.3 190 57.9
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.3e-53 214.2 159 64.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 3.3e-52 209.5 169 60.9
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.1e-50 204.5 139 73.4
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.7e-48 197.2 185 54.6
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.9e-47 193.7 179 61.5
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 2.3e-45 186.8 128 60.2
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 2.8e-43 179.9 170 57.1
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 1.0e-40 171.4 111 65.8
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.0e-40 169.1 214 49.1
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 4.8e-35 152.5 93 76.3
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 2.4e-34 150.2 136 50.0
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.1e-34 149.8 98 71.4
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.1e-34 149.8 98 71.4
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.0e-32 144.8 92 75.0
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 6.5e-32 142.1 127 50.4
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.9e-31 140.6 128 47.7
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 1.0e-29 134.8 82 76.8
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 7.0e-26 122.1 140 50.0
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 3.5e-25 119.8 139 51.1
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.3e-24 117.9 138 51.4
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 3.2e-23 113.2 103 54.4
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 6.1e-22 109.0 92 57.6
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.8e-18 97.4 113 37.2
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 4.1e-10 69.7 38 84.2
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 5.0e-08 62.8 164 27.4


User provided reference genes

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