Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g106480 Pisum sativum HOM05D000121 ORTHO05D019804 2.9e-32 141.4 75 100.0
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 1.8e-29 132.1 73 95.9
Psat7g079320 Pisum sativum HOM05D000121 ORTHO05D000102 2.6e-25 118.2 112 64.3
TPR.G17103 Trifolium pratense HOM05D000121 ORTHO05D000102 4.5e-25 117.5 89 75.3
Lalb_Chr07g0187281 Lupinus albus HOM05D000121 ORTHO05D000102 1.0e-24 116.3 72 80.6
Medtr8g080050 Medicago truncatula HOM05D000121 ORTHO05D000102 1.7e-24 115.5 73 84.9
Ca_18067_v3 Cicer arietinum L. HOM05D000121 ORTHO05D000102 2.2e-24 115.2 73 79.5
arahy.Tifrunner.gnm1.ann1.64K373 Arachis hypogaea HOM05D000121 ORTHO05D000102 2.5e-23 111.7 72 77.8
arahy.Tifrunner.gnm1.ann1.IBMY13 Arachis hypogaea HOM05D000121 ORTHO05D000102 9.4e-23 109.8 72 76.4
arahy.Tifrunner.gnm1.ann1.C8R5TR Arachis hypogaea HOM05D000121 ORTHO05D019804 3.6e-22 107.8 72 75.0
arahy.Tifrunner.gnm1.ann1.JPV4T4 Arachis hypogaea HOM05D000121 ORTHO05D000102 6.1e-22 107.1 72 75.0
Glyma.08G101500 Glycine max HOM05D000121 ORTHO05D000102 2.3e-21 105.1 72 77.8
Lj4g0014238 Lotus japonicus HOM05D000121 ORTHO05D000102 3.0e-21 104.8 72 75.0
arahy.Tifrunner.gnm1.ann1.Q2YU6P Arachis hypogaea HOM05D000121 ORTHO05D019804 8.8e-21 103.2 69 76.8
Glyma.05G145000 Glycine max HOM05D000121 ORTHO05D000102 8.8e-21 103.2 72 76.4
VMungo0251G1040 Vigna mungo HOM05D000121 ORTHO05D000102 1.3e-19 99.4 72 73.6
Hma1.2p1_0856F.1_g229120 Hydrangea macrophylla HOM05D000121 ORTHO05D000102 2.8e-19 98.2 72 66.7
Gohir.A04G138400 Gossypium hirsutum HOM05D000121 ORTHO05D000102 1.1e-18 96.3 71 71.8
TPR.G28781 Trifolium pratense HOM05D000121 ORTHO05D000102 1.1e-18 96.3 94 57.4
Gohir.D04G181300 Gossypium hirsutum HOM05D000121 ORTHO05D000102 1.4e-18 95.9 71 70.4
Gorai.012G174600 Gossypium raimondii HOM05D000121 ORTHO05D000102 1.4e-18 95.9 71 70.4
Dinv14792 Davidia involucrata HOM05D000121 ORTHO05D000102 3.1e-18 94.7 71 66.2
Rhsim12G0106500 Rhododendron simsii HOM05D000121 ORTHO05D000102 5.3e-18 94.0 73 60.3
Thecc.02G273200 Theobroma cacao HOM05D000121 ORTHO05D000102 7.0e-18 93.6 71 66.2
Ciclev10030504m.g Citrus clementina HOM05D000121 ORTHO05D000102 9.1e-18 93.2 71 67.6
FAN07G2186 Fragaria x ananassa HOM05D000121 ORTHO05D000102 9.1e-18 93.2 71 67.6
Haze_12339 Corylus avellana HOM05D000121 ORTHO05D000102 1.2e-17 92.8 72 66.7
FAN17G1934 Fragaria x ananassa HOM05D000121 ORTHO05D000102 1.2e-17 92.8 71 69.0
Phvul.002G176600 Phaseolus vulgaris HOM05D000121 ORTHO05D000102 1.2e-17 92.8 72 69.4
FAN12G3499 Fragaria x ananassa HOM05D000121 ORTHO05D000102 2.0e-17 92.0 71 67.6
vmacro16142 Vaccinium macrocarpon HOM05D000121 ORTHO05D000102 2.0e-17 92.0 73 58.9
Cfa009307 Carpinus fangiana HOM05D000121 ORTHO05D000102 2.6e-17 91.7 72 65.3
Hma1.2p1_1557F.1_g290590 Hydrangea macrophylla HOM05D000121 ORTHO05D000102 4.5e-17 90.9 72 61.1
RcHm_v2.0_Chr4g0431711 Rosa chinensis HOM05D000121 ORTHO05D000102 5.9e-17 90.5 71 67.6
ECA233G1741 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.3e-16 89.4 73 61.6
Manes.12G015700 Manihot esculenta HOM05D000121 ORTHO05D000102 1.3e-16 89.4 72 62.5
Sed0023218 Sechium edule HOM05D000121 ORTHO05D000102 1.3e-16 89.4 72 61.1
Nn3g16552 Nelumbo nucifera HOM05D000121 ORTHO05D000102 1.7e-16 89.0 71 62.0
QL03p055135 Quercus lobata HOM05D000121 ORTHO05D000102 1.7e-16 89.0 72 59.7
Potri.010G055200 Populus trichocarpa HOM05D000121 ORTHO05D000102 2.2e-16 88.6 72 66.7
Prupe.1G236100 Prunus persica HOM05D000121 ORTHO05D000102 2.2e-16 88.6 71 63.4
Sabra10G0049800 Salix brachista HOM05D000121 ORTHO05D000102 2.2e-16 88.6 72 66.7
GSVIVG01010326001 Vitis vinifera HOM05D000121 ORTHO05D000102 2.9e-16 88.2 71 62.0
CsaV3_5G030540 Cucumis sativus L. HOM05D000121 ORTHO05D000102 3.8e-16 87.8 72 59.7
Manes.13G015000 Manihot esculenta HOM05D000121 ORTHO05D000102 3.8e-16 87.8 72 61.1
Oeu032635.1 Olea europaea HOM05D000121 ORTHO05D000102 3.8e-16 87.8 72 59.7
PGR119G0477 Punica granatum HOM05D000121 ORTHO05D000102 3.8e-16 87.8 71 57.7
Sc04g0009920 Simmondsia chinensis HOM05D000121 ORTHO05D000102 3.8e-16 87.8 73 61.6
Actinidia33266 Actinidia chinensis HOM05D000121 ORTHO05D000102 5.0e-16 87.4 71 60.6
MD16G1109500 Malus domestica HOM05D000121 ORTHO05D000102 5.0e-16 87.4 71 63.4
CiPaw.05G172900 Carya illinoinensis HOM05D000121 ORTHO05D000102 6.5e-16 87.0 71 64.8
Gohir.D02G153200 Gossypium hirsutum HOM05D000121 ORTHO05D000102 6.5e-16 87.0 71 62.0
Gorai.005G172300 Gossypium raimondii HOM05D000121 ORTHO05D000102 6.5e-16 87.0 71 62.0
HanXRQChr12g0372261 Helianthus annuus HOM05D000121 ORTHO05D000102 6.5e-16 87.0 72 63.9
Cpa.g.sc43.1 Carica papaya HOM05D000121 ORTHO05D000102 1.1e-15 86.3 72 61.1
Duzib248G0990 Durio zibethinus HOM05D000121 ORTHO05D000102 1.5e-15 85.9 71 63.4
Lsat_1_v5_gn_8_151721 Lactuca sativa HOM05D000121 ORTHO05D000102 1.9e-15 85.5 73 57.5
Cc11_g16490 Coffea canephora HOM05D000121 ORTHO05D000102 2.5e-15 85.1 73 60.3
Lj6C820T15 Lonicera japonica HOM05D000121 ORTHO05D000102 3.2e-15 84.7 72 58.3
Actinidia25752 Actinidia chinensis HOM05D000121 ORTHO05D000102 5.5e-15 84.0 71 60.6
Potri.008G179500 Populus trichocarpa HOM05D000121 ORTHO05D000102 5.5e-15 84.0 72 63.9
Sed0022290 Sechium edule HOM05D000121 ORTHO05D000102 5.5e-15 84.0 72 58.3
CSS0001753 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 9.4e-15 83.2 72 58.3
CSS0034881 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D000102 9.4e-15 83.2 72 58.3
DCAR_013707 Daucus carota HOM05D000121 ORTHO05D000102 9.4e-15 83.2 71 56.3
DCAR_024080 Daucus carota HOM05D000121 ORTHO05D000102 9.4e-15 83.2 71 56.3
AUR62024169 Chenopodium quinoa HOM05D000121 ORTHO05D000102 1.2e-14 82.8 73 58.9
Sabra08G0137100 Salix brachista HOM05D000121 ORTHO05D000102 1.2e-14 82.8 72 65.3
TAR629G2283 Trochodendron aralioides HOM05D000121 ORTHO05D000102 1.6e-14 82.4 70 58.6
Prupe.1G235800 Prunus persica HOM05D000121 ORTHO05D000102 2.1e-14 82.0 71 60.6
Peaxi162Scf00128g00825 Petunia axillaris HOM05D000121 ORTHO05D000102 2.7e-14 81.6 72 55.6
ClCG05G026280 Citrullus lanatus HOM05D000121 ORTHO05D000102 4.7e-14 80.9 71 56.3
QL03p055058 Quercus lobata HOM05D000121 ORTHO05D000102 4.7e-14 80.9 72 61.1
Eucgr.H04675 Eucalyptus grandis HOM05D000121 ORTHO05D000102 6.1e-14 80.5 72 58.3
AUR62005565 Chenopodium quinoa HOM05D000121 ORTHO05D000102 1.0e-13 79.7 73 57.5
Dinv14790 Davidia involucrata HOM05D000121 ORTHO05D000102 1.0e-13 79.7 71 52.1
EL10Ac6g13426 Beta vulgaris HOM05D000121 ORTHO05D000102 1.4e-13 79.3 73 58.9
CANSAT01G3062 Cannabis sativa HOM05D000121 ORTHO05D000102 2.3e-13 78.6 71 54.9
PGSC0003DMG400017432 Solanum tuberosum HOM05D000121 ORTHO05D000102 2.3e-13 78.6 72 54.2
CDE07G1416 Ceratophyllum demersum HOM05D000121 ORTHO05D000791 3.0e-13 78.2 73 47.9
Hund06142 Selenicereus undatus HOM05D000121 ORTHO05D000102 3.0e-13 78.2 73 58.9
Hund06140 Selenicereus undatus HOM05D000121 ORTHO05D000102 4.0e-13 77.8 73 57.5
Cc10_g12380 Coffea canephora HOM05D000121 ORTHO05D000102 8.8e-13 76.6 72 54.2
Eucgr.H04677 Eucalyptus grandis HOM05D000121 ORTHO05D000102 1.5e-12 75.9 73 54.8
Dinv14791 Davidia involucrata HOM05D000121 ORTHO05D019804 2.0e-12 75.5 72 52.8
MSTRG.526 Avicennia marina HOM05D000121 ORTHO05D000102 2.6e-12 75.1 72 56.9
Eucgr.H04676 Eucalyptus grandis HOM05D000121 ORTHO05D000102 3.4e-12 74.7 72 55.6
Ah.02g130550 Amaranthus hybridus HOM05D000121 ORTHO05D000102 4.4e-12 74.3 73 56.2
MD13G1109600 Malus domestica HOM05D000121 ORTHO05D000102 5.7e-12 73.9 71 56.3
Sopen05g009510 Solanum pennellii HOM05D000121 ORTHO05D000102 5.7e-12 73.9 68 54.4
Nn4g22426 Nelumbo nucifera HOM05D000121 ORTHO05D000102 7.5e-12 73.6 68 54.4
MSTRG.7972 Avicennia marina HOM05D000121 ORTHO05D000102 9.7e-12 73.2 71 56.3
Nitab4.5_0000581g0170 Nicotiana tabacum HOM05D000121 ORTHO05D000102 9.7e-12 73.2 72 51.4
SalBow2G0637 Salvia bowleyana HOM05D000121 ORTHO05D000102 1.3e-11 72.8 72 56.9
SHI17921 Sapria himalayana HOM05D000121 ORTHO05D000102 2.8e-11 71.6 62 58.1
PGSC0003DMG400017456 Solanum tuberosum HOM05D000121 ORTHO05D000102 3.7e-11 71.2 72 48.6
SGA_v2.0_scaffold46G17384 Striga asiatica HOM05D000121 ORTHO05D000102 4.8e-11 70.9 72 52.8
RcHm_v2.0_Chr4g0431551 Rosa chinensis HOM05D000121 ORTHO05D000102 1.4e-10 69.3 69 55.1
Aqoxy5G03531 Aquilegia oxysepala HOM05D000121 ORTHO05D000102 3.1e-10 68.2 72 50.0
THA.LOC104825690 Tarenaya hassleriana HOM05D000121 ORTHO05D000102 4.1e-10 67.8 72 51.4
Aqoxy5G03562 Aquilegia oxysepala HOM05D000121 ORTHO05D000102 5.3e-10 67.4 71 52.1
arahy.Tifrunner.gnm1.ann1.JN5IRZ Arachis hypogaea HOM05D000121 ORTHO05D000102 7.0e-10 67.0 45 71.1
Lj4g0004517 Lotus japonicus HOM05D000121 ORTHO05D000102 7.0e-10 67.0 69 55.1
THA.LOC104825692 Tarenaya hassleriana HOM05D000121 ORTHO05D019804 2.0e-09 65.5 72 50.0
RcHm_v2.0_Chr4g0431141 Rosa chinensis HOM05D000121 ORTHO05D000102 1.3e-08 62.8 85 47.1
unitig_747.g21133 Utricularia gibba HOM05D000121 ORTHO05D000102 1.3e-08 62.8 73 46.6
ATR0686G195 Amborella trichopoda HOM05D000121 ORTHO05D000102 5.0e-08 60.8 77 45.5
Cpa.g.sc43.2 Carica papaya HOM05D000121 ORTHO05D019804 5.0e-08 60.8 70 48.6
MELO3C011894.2 Cucumis melo HOM05D000121 ORTHO05D000102 8.5e-08 60.1 48 56.2
COL.COLO4_16230 Corchorus olitorius HOM05D000121 ORTHO05D000102 1.1e-07 59.7 72 50.0
Aqoxy5G03545 Aquilegia oxysepala HOM05D000121 ORTHO05D000102 1.9e-07 58.9 73 39.7
Potri.018G149700 Populus trichocarpa HOM05D000121 ORTHO05D000102 7.2e-07 57.0 71 46.5


User provided reference genes

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